View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12024_high_3 (Length: 373)
Name: NF12024_high_3
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12024_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 35448016 - 35448366
Alignment:
| Q |
1 |
cacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatccatgagttatggttttatgtacaaca |
100 |
Q |
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| T |
35448016 |
cacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatccatgagttatggttttatgtacaaca |
35448115 |
T |
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| Q |
101 |
ctgttctagcattttgttaaacctgcagccaagataaacaattnnnnnnnttcgttcatgtagtaaaaactaattaaaaactcaggtagcttaaattgca |
200 |
Q |
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| T |
35448116 |
ctgttctagcattttgttaaacctgcagccaagataaacaattaaaaaaattcgtgcatgtagtaaaaactaattaaaaactcacgtagcttaaattgca |
35448215 |
T |
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| Q |
201 |
ctctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaacacatatatcatgcaagtggcttcc |
300 |
Q |
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| T |
35448216 |
ctctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaacacatatatcatgcaagtggcttcc |
35448315 |
T |
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| Q |
301 |
taatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgat |
351 |
Q |
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| T |
35448316 |
taatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgat |
35448366 |
T |
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