View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12024_high_6 (Length: 334)
Name: NF12024_high_6
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12024_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 5675902 - 5676227
Alignment:
| Q |
10 |
agatgaagctcaagagaattattttaggtagttattatatcatcttgatcaatagaatgtgaagacttgttttattgttccaacgagaggtatccgaata |
109 |
Q |
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| T |
5675902 |
agatgaagctcaagagaattattttaggtagttattatattatcttgatcaatagaatgtgaagacttgttttattgttcccacgtgaggtatccgaata |
5676001 |
T |
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| Q |
110 |
ctctcatagtcactgcacttatgaatctcgaccattggataaagatttt-agcttgtactttgtgttgtattcataatcaatttaatgataggaaaacac |
208 |
Q |
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| T |
5676002 |
ctctcatagtcactgcacttatgaatctcgaccattggataaagatttttagctcgtactttgtgttgtattcataatcaatttaatgataggaaaacac |
5676101 |
T |
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| Q |
209 |
aaggggtccgatgttcattcaatgctcaagattcacaattgttgtaactcgcaatcacagataatctatttccatacagagataggatgtagaattagat |
308 |
Q |
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||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5676102 |
aagcggtccgatcttcattcaatggtcaagattcacaattgttgtaactcgcaatcacagataatctatttccatagagagataggatgtagaattagat |
5676201 |
T |
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| Q |
309 |
gattgtgagataattcatattctaag |
334 |
Q |
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| T |
5676202 |
gattgtgagataattcatattctaag |
5676227 |
T |
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