View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12024_high_8 (Length: 331)
Name: NF12024_high_8
Description: NF12024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12024_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 331
Target Start/End: Complemental strand, 40894279 - 40893979
Alignment:
| Q |
31 |
aacttttgggtcctaattgtaaaacaattccaactttaacacaccacaaacattacaacattcatggtttttgtagctccatatgtacagaaaccacata |
130 |
Q |
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| T |
40894279 |
aacttttgggtcctaattgtaaaacaattccaactttaacacaccacaaacattacaacattcatgatttttgtagctccatatgtacacaaaccacata |
40894180 |
T |
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| Q |
131 |
attctgagacacaccacaagaagctacacatacatccactacaaatgatctcactcactccctaaatgaaaaaccaaacgcaaatttgaagctgaaatgg |
230 |
Q |
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| T |
40894179 |
attctgagacacaccacaagaagctacacatacatccactacaaatgatctcactcacttcctaaatgaaaaatcaaacgcaaatttgaagctgaaatgg |
40894080 |
T |
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| Q |
231 |
cgagagagnnnnnnnngaaacagacaaacaactcctaaaatagtccaagctccctgaaacaaacaaccagaagtcctccaatatgaaattcaatttaaaa |
330 |
Q |
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| T |
40894079 |
cgagagaaaaaaaaaagaaacagacaaacaactcctgaaatagttcaagctccctgaaacaaacaaccagaaatcctccaatatgaaattcaatttaaaa |
40893980 |
T |
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| Q |
331 |
a |
331 |
Q |
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| T |
40893979 |
a |
40893979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 31621396 - 31621364
Alignment:
| Q |
197 |
tgaaaaaccaaacgcaaatttgaagctgaaatg |
229 |
Q |
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| T |
31621396 |
tgaaaaagcaaacgcaaatttgaagctgaaatg |
31621364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 36574734 - 36574766
Alignment:
| Q |
197 |
tgaaaaaccaaacgcaaatttgaagctgaaatg |
229 |
Q |
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| T |
36574734 |
tgaaaaagcaaacgcaaatttgaagctgaaatg |
36574766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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