View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12025_high_4 (Length: 443)
Name: NF12025_high_4
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12025_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 2207090 - 2206870
Alignment:
| Q |
19 |
tcaatatctactggaacaagagttgaataattatcttctggtgtatcataggaattttcaatattttatgcgattcatcgcaatacaagctagaagctgt |
118 |
Q |
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| T |
2207090 |
tcaatatctactggaacaagagttgaataattatcttctggtgtatcataggaattttcaatattttatgcgattcatcgcaatacaagctagaagctgt |
2206991 |
T |
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| Q |
119 |
ttggtcttcaagttcttccaactcttcctacatcggataatttatcatctcatttgaatagnnnnnnncttcttcttttccatctatatgtattattgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2206990 |
ttggtcttcaagttcttccaactcttcctacatcggataatttatcatctcatttgaatagttttttttttcttcttttccatctatatgtattattgca |
2206891 |
T |
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| Q |
219 |
ttttcataaataattcataaa |
239 |
Q |
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||||||||||||||||||||| |
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| T |
2206890 |
ttttcataaataattcataaa |
2206870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 2206753 - 2206682
Alignment:
| Q |
356 |
caaagcaaacacaccattaaagtggttaaaattgatttcggagatgtaaaattgatttttgacatgtttcat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206753 |
caaagcaaacacaccattaaagtggttaaaattgatttcggagatgtaaaattgatttttgacatgtttcat |
2206682 |
T |
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