View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12025_low_1 (Length: 551)
Name: NF12025_low_1
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12025_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 312 - 533
Target Start/End: Original strand, 8232577 - 8232794
Alignment:
| Q |
312 |
gttgataaatcaaataataaaattttgtattgaaaagaacatgttatggttaattaacaagtgtacgattgattactctacgataacttttacaattctt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8232577 |
gttgataaatcaaataataaaattttgtattgaaaagaacatgttatggttaattaacaagtgtacgatt----actctacgataacttttacaattctt |
8232672 |
T |
|
| Q |
412 |
ttatgtattatggtcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtgatttatctactggtgtgtgt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8232673 |
ttatgtattatggtcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtgatttatctactggtgtgtgt |
8232772 |
T |
|
| Q |
512 |
tttgcatctggtggtgctggat |
533 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
8232773 |
tttgcatccggtggtgctggat |
8232794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 8232467 - 8232538
Alignment:
| Q |
231 |
gtgaagttctttccacataaaatgcgtaagtattaggcctaagttttattcttaatcaaatccgtctatata |
302 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8232467 |
gtgaagttctttctacataaaatgcctaagtattagacctaagttttattcttaatcaaatccgtctatata |
8232538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 8270859 - 8270967
Alignment:
| Q |
425 |
tcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtgatttatctactggtgtgtgttttgcatctggtg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||| || ||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
8270859 |
tcagttgaagaattaggcattaaagaatttctacccccttacttggatcctaagctccaacctagtgaattgaccactggtgtgtgctttgcatctggtg |
8270958 |
T |
|
| Q |
525 |
gtgctggat |
533 |
Q |
| |
|
| ||||||| |
|
|
| T |
8270959 |
gcgctggat |
8270967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 425 - 492
Target Start/End: Original strand, 8243025 - 8243092
Alignment:
| Q |
425 |
tcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtga |
492 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
8243025 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatctccagcctagtga |
8243092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 425 - 492
Target Start/End: Original strand, 8252890 - 8252957
Alignment:
| Q |
425 |
tcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctccagcccagtga |
492 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
8252890 |
tcagttgaagaattaggcattaaagaatatctaccagcatatttggatccaaatcttcagcctagtga |
8252957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 10693412 - 10693222
Alignment:
| Q |
17 |
atctagttattgaaaaatagcatatttcgattgatttattgaagaatagttattgacataagtaattattgaattgtttgaaagagcatatgaaaacaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10693412 |
atctagttattgaaaaatagcatatttcgattgatttattgaagaatagttattgacataagtaattattgaattgtttgaaagagcatatgaaaacaac |
10693313 |
T |
|
| Q |
117 |
ttatgatatgtttgtaacttattttcaggtaatctctatagggtaacttatgaaaacaatttatagtttatagtttgtatgcaaacatttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10693312 |
ttatgatatgtttgtaacttattttcaggtaatctctatagggtaacttatgaaaacaatttatagtttatagtttgtatgcaaacatttt |
10693222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 24281148 - 24281112
Alignment:
| Q |
89 |
attgtttgaaagagcatatgaaaacaacttatgatat |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
24281148 |
attgtttgagagagcttatgaaaacaacttatgatat |
24281112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 53296436 - 53296492
Alignment:
| Q |
425 |
tcagttgaagaattaggcattaaagaatttctaccagcatacttggatccaaatctc |
481 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||| || ||||||||||||||| |
|
|
| T |
53296436 |
tcagttgaagagttaggtattaaagagcttttaccagcttatttggatccaaatctc |
53296492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University