View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12025_low_2 (Length: 469)
Name: NF12025_low_2
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12025_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Original strand, 47991085 - 47991526
Alignment:
| Q |
14 |
gtttttaccctgctttctggaaaaagctgtttagctcatcccatctttgcattggtaagcaccctttagtgaaaccaaaatcaaccttttctttagagct |
113 |
Q |
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| T |
47991085 |
gtttttaccctgctttttggaaaaagctgtttagctcatcccatctttgcattggtaagcaccctttagtgaaaccaaaatcaatcttttctttagagct |
47991184 |
T |
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| Q |
114 |
cagagcaaatggagtacaaggttgcttattatcttcagtttcatatatgaccatatcttgcaaagtaccacccaatctaattttcaaaggtgaaaaggct |
213 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47991185 |
cagagcaaatggagtacaggattgcttattatcttcagttccatatatgaccatatcttgcaaagtaccacccaatctaattttcaaaggtgaaaaggct |
47991284 |
T |
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| Q |
214 |
gcaaaacattcaaaggcaatgataccttaattaactctcagaaaaacaatgaaacatgaattattaaattgctgtaaaaataaagaacagacatgtgaat |
313 |
Q |
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| T |
47991285 |
gcaaaacattcaaaggcaatgataccttaattaactctcagaaaaacaatgaaacatgaattattaaattgctgtaaaaataaagaacagacatgtgaat |
47991384 |
T |
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| Q |
314 |
tttctcttaccttttattgcatttaacaaaattttgttgttgaggtcctgcatgagattaaaatcataatatgtaaattatctctttcactaggcataaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47991385 |
tttctcttaccttttattgcatttaacaaaattttgttgttgaggtcctgcatgagattaaaatcataatatgtaaattatctctttcactaggcataaa |
47991484 |
T |
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| Q |
414 |
tgaaaatcacattagctttaattttggcagcaatgaaacatt |
455 |
Q |
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| T |
47991485 |
tgaaaatcacattagctttaattttggcagcaatgaaacatt |
47991526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 47982141 - 47982406
Alignment:
| Q |
15 |
tttttaccctgctttctggaaaaagctgtttagctcatcccatctttgcattggtaagcaccctttagtgaaaccaaaatcaaccttttctttagagctc |
114 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |||||| ||||||||| ||||||| |||||||||||| ||| ||| |||| | || |
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| T |
47982141 |
tttttaccctgctttttggaaaaagctgattagctcatcttatcttttcattggtaaacacccttgagtgaaaccaaa--caa----ttcattagggttc |
47982234 |
T |
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| Q |
115 |
agagcaaatggagtacaaggttgcttattatcttcagtttcatatatgaccatatcttgcaaagtaccacccaatctaattttcaaaggtgaaaaggctg |
214 |
Q |
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| T |
47982235 |
aaaacaaaggtagtacaatgttgcttattatcttgagtcccatatgtgagtttatcttgcaaggtgccacccaatctaattttcaagggtgaaaaggctg |
47982334 |
T |
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| Q |
215 |
caaaacattcaaaggcaatgataccttaattaactct---cagaaaaacaatgaaacatgaattattaaatt |
283 |
Q |
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| T |
47982335 |
caaaacattcaaaggcaatgataacttaattaactcttaacaaaaaaataatgaaacatgaattattaaatt |
47982406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 22878909 - 22878958
Alignment:
| Q |
315 |
ttctcttaccttttattgcatttaacaaaattttgttgttgaggtcctgc |
364 |
Q |
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|||||| |||||| | ||||||||| ||||| |||||||||||||||||| |
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| T |
22878909 |
ttctctcacctttcactgcatttaagaaaatcttgttgttgaggtcctgc |
22878958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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