View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12025_low_3 (Length: 462)

Name: NF12025_low_3
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12025_low_3
NF12025_low_3
[»] chr7 (4 HSPs)
chr7 (19-451)||(1459932-1460370)
chr7 (96-223)||(12094079-12094206)
chr7 (108-222)||(1446672-1446786)
chr7 (112-223)||(12104419-12104530)
[»] chr2 (4 HSPs)
chr2 (120-223)||(820412-820515)
chr2 (106-223)||(409117-409234)
chr2 (98-219)||(997449-997570)
chr2 (120-221)||(975622-975723)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 1459932 - 1460370
Alignment:
Q  19 gtaatgattatcagcagcttgtcgcgaaacaacgtatttggttaccgtcaccgttttggttccgacgaattcgagagctggaacgagacaccatagattc 118  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1459932 gtaatgattaccagcagcttgtcgcgaaacaacgtatttggataccgtcaccgttttggttccgacaaattcgagagctggaacgagacaccatagattc 1460031  T
Q  119 ttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1460032 ttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctat 1460131  T
Q  219 ctacctcctcctccacagcctccaccgttgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggttgacaaacagggtta 318  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1460132 ctacctcctcctccatagcctccaccgctgaagtttccggctgagacattctgttacgacggcaaggtgttcttcatgattaggttgacagacagggtta 1460231  T
Q  319 gggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatttca------ccaaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  1460232 gggttggaagcgaatagcttttaaaagcaacaagaattagggtttcgataggcaaggtttacacttgaattgggttgggccgtatttcaccaaatccaaa 1460331  T
Q  413 tccaaatcaatcagttgtctttagaaaattattcatctc 451  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1460332 tccaaatcaatcagttgtctttagaaaattattcatctc 1460370  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 12094206 - 12094079
Alignment:
Q  96 ctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatc 195  Q
    ||||||||  ||||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||| || ||| ||||||||||  ||||||||    
T  12094206 ctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaagaagacagaatgtgaatcaggatatc 12094107  T
Q  196 atctggtaaaatgctgatcctatctacc 223  Q
     ||||||||| |||||||||||||||||    
T  12094106 gtctggtaaattgctgatcctatctacc 12094079  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 1446672 - 1446786
Alignment:
Q  108 accatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaat 207  Q
    ||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| |    
T  1446672 accatagatgcttccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaact 1446771  T
Q  208 gctgatcctatctac 222  Q
    ||| |||||||||||    
T  1446772 gcttatcctatctac 1446786  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 12104530 - 12104419
Alignment:
Q  112 tagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctg 211  Q
    ||||| ||||||||||||||||||||  ||||| | ||||||||||||||||||||||  ||||||||||||||  |||||||| |||| |||| |||||    
T  12104530 tagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcgtctgataaattgctg 12104431  T
Q  212 atcctatctacc 223  Q
    ||| ||||||||    
T  12104430 atcatatctacc 12104419  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 820515 - 820412
Alignment:
Q  120 tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc 219  Q
    |||||| ||||||||||| |||||| ||||||||||||||||| |||| || ||||||||| ||||  |||||||||||  ||||| || ||||||||||    
T  820515 tccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagagaatatgaatcaggatatcatccagtaaactgttgatcctatc 820416  T
Q  220 tacc 223  Q
    ||||    
T  820415 tacc 820412  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 409234 - 409117
Alignment:
Q  106 acaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaa 205  Q
    |||||||||||   |||||||||||||||||| ||| || |||||||||||||||||||||| |  ||||||||||||||  || || || |||||||||    
T  409234 acaccatagatgagtccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaaa 409135  T
Q  206 atgctgatcctatctacc 223  Q
     | |  ||||||||||||    
T  409134 cttccaatcctatctacc 409117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 997449 - 997570
Alignment:
Q  98 ggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcat 197  Q
    |||||| | ||| |||||||  |||||| ||||||||||| ||||||  | ||||||||||||||||||| |  |||||||||||| | |||||| || |    
T  997449 ggaacgtggcactatagattaatccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggatctcgt 997548  T
Q  198 ctggtaaaatgctgatcctatc 219  Q
    | |||||| | | |||||||||    
T  997549 ccggtaaacttccgatcctatc 997570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 975622 - 975723
Alignment:
Q  120 tccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatcatctggtaaaatgctgatcctatc 219  Q
    |||||| ||||||||||| |||||| ||| |||||||||   ||||||||| |||||||||| |||  ||||| || || || ||| |||| ||||||||    
T  975622 tccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggatgtcgtcgggaaaactgctaatcctatc 975721  T
Q  220 ta 221  Q
    ||    
T  975722 ta 975723  T

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