View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12025_low_5 (Length: 363)
Name: NF12025_low_5
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12025_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 40846324 - 40845972
Alignment:
| Q |
10 |
aaaccatattacatattaaaattacgattgctcaataaaccctccaaaattgctcatattcatgnnnnnnnnnntgattggaaaatatgacccgattaag |
109 |
Q |
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| T |
40846324 |
aaaccatatgacatattaaaatgacgattgctcaataaaccctccaaaattgctcatattcatgaaaaaaaaa-tgattggaaaatatgacccaattaag |
40846226 |
T |
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| Q |
110 |
gtttacat--------------caagagttacgatcagattgattgaaaattttgaggaggccaattaaggaaccatcttttaaagaataagtcaattgc |
195 |
Q |
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| T |
40846225 |
gtttacatataaaaaaattgatcaagagttacgatcaaatcgattgaaaattttgagggggccaattaaggaaccatcttttaaaaaataagtcaattgc |
40846126 |
T |
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| Q |
196 |
tcctttggcttttgaaattgtagaagtaagacatttacacctct--tgnnnnnnnnttgggttttgaatgacgctgaccaacttggttttattgacttgt |
293 |
Q |
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| T |
40846125 |
tccttcggcttttgaaattgtagaagtaagacatttacacctctcaaaaaaaaaaattgggttttgaatgaagctgaccaacttggttttattgacttgt |
40846026 |
T |
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| Q |
294 |
aatgattagtttgaaagtaagtgacataaatatgggacaagtttagtaataaat |
347 |
Q |
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| T |
40846025 |
aatgattagtttgaaagtaagtgacataaatatgggacaagtttagtaataaat |
40845972 |
T |
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