View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12025_low_6 (Length: 325)
Name: NF12025_low_6
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12025_low_6 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 6346655 - 6346356
Alignment:
| Q |
19 |
tgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttct |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| || |||||||||||||| |
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| T |
6346655 |
tgaatgaagttggaaaactattaagccaattttttgagctattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttct |
6346556 |
T |
|
| Q |
119 |
gtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggtt |
218 |
Q |
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| T |
6346555 |
gatggctttggttttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggtt |
6346456 |
T |
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| Q |
219 |
attgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggannnnnnngggcttgtggatcttactctctgctt |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
6346455 |
attgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgggcttgtggatcttactctttgctt |
6346356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 126 - 312
Target Start/End: Original strand, 6219562 - 6219748
Alignment:
| Q |
126 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
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| Q |
226 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggannnnnnngggcttgtggatcttactct |
312 |
Q |
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| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgtgcttgtggatcttactct |
6219748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 6333434 - 6333272
Alignment:
| Q |
123 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
222 |
Q |
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|||||||||||||||||| |||||| || | ||| |||||||||| | ||| ||| || ||||||||||||| ||| |||| | || |||| | ||| |
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| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
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| Q |
223 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttgga |
285 |
Q |
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| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttgga |
6333272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 6242619 - 6242845
Alignment:
| Q |
19 |
tgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttct |
118 |
Q |
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|||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| |||| | | ||||| | ||| | |
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| T |
6242619 |
tgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctctactgat |
6242718 |
T |
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| Q |
119 |
gtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggtt |
218 |
Q |
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| | ||||| |||||| || ||||| || | | | |||||||||| | |||| ||| ||| |||||||||| || |||||||||| ||||||||| |
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| T |
6242719 |
gatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatggta |
6242818 |
T |
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| Q |
219 |
attgttttacttggaagtgttgtttca |
245 |
Q |
| |
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||| ||||||||||||||||| ||||| |
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| T |
6242819 |
attcttttacttggaagtgttatttca |
6242845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 6325957 - 6325835
Alignment:
| Q |
123 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
222 |
Q |
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|||||||||||||||||| |||||| || | ||| |||||||||| | |||| | | || |||||||||||||| ||| |||| | || |||| | ||| |
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| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
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| Q |
223 |
ttttacttggaagtgttgtttca |
245 |
Q |
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||||||||||||||||||||||| |
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| T |
6325857 |
ttttacttggaagtgttgtttca |
6325835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 6326076 - 6326013
Alignment:
| Q |
19 |
tgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
82 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
6326076 |
tgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6326013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 6333553 - 6333490
Alignment:
| Q |
19 |
tgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
82 |
Q |
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|||| ||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
6333553 |
tgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6333490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 992 - 1093
Alignment:
| Q |
184 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
283 |
Q |
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|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
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| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
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| Q |
284 |
ga |
285 |
Q |
| |
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|| |
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|
| T |
1092 |
ga |
1093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 845 - 909
Alignment:
| Q |
19 |
tgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgca |
83 |
Q |
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|||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
845 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgca |
909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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