View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12025_low_7 (Length: 316)

Name: NF12025_low_7
Description: NF12025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12025_low_7
NF12025_low_7
[»] chr5 (4 HSPs)
chr5 (1-302)||(40846342-40846634)
chr5 (170-226)||(40609387-40609443)
chr5 (111-186)||(8783628-8783703)
chr5 (240-291)||(40608819-40608870)
[»] chr8 (2 HSPs)
chr8 (100-218)||(7256114-7256231)
chr8 (103-159)||(44260319-44260375)
[»] chr7 (5 HSPs)
chr7 (118-217)||(4262424-4262523)
chr7 (103-219)||(4278212-4278326)
chr7 (240-294)||(4278121-4278175)
chr7 (111-186)||(18703460-18703535)
chr7 (104-181)||(7331135-7331212)
[»] chr4 (8 HSPs)
chr4 (105-180)||(34747100-34747175)
chr4 (240-302)||(29381397-29381459)
chr4 (179-293)||(29380911-29381021)
chr4 (102-190)||(8492105-8492192)
chr4 (106-189)||(25735393-25735476)
chr4 (81-187)||(29380560-29380666)
chr4 (143-197)||(29381448-29381501)
chr4 (104-181)||(2520271-2520348)
[»] chr6 (1 HSPs)
chr6 (104-168)||(26275452-26275516)
[»] chr2 (2 HSPs)
chr2 (104-181)||(29982175-29982252)
chr2 (104-181)||(37644429-37644506)
[»] chr1 (2 HSPs)
chr1 (104-181)||(32517526-32517603)
chr1 (104-181)||(45880779-45880856)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 40846342 - 40846634
Alignment:
Q  1 cggttcacttcgaatagacccaagcccttacatgtagggcacacaaaaagggacatcgattgtttcgtcccaaaacttcatggaggtttctttttggggc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40846342 cggttcactttgaatagacccaagcccttacatgtagggcacacaacaagggacatcgattgtttcgtcccaaaacttcatggaggtttctttttagggc 40846441  T
Q  101 tcc-atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttat 199  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  40846442 ccccatatctctttaggccctccaaaattacaaaattgtccttaataacacttccggtagataaatacctgaggttcatttttaaaaatttcgattttgt 40846541  T
Q  200 gcttctagtagataactcccgaaagtgcnnnnnnnnnnnnaattttgattttgttactctggtacataactactgtaagtgtatttttaaaattccgcct 299  Q
    ||||||||||||||||||||||||||||            |||||||||||||||||||||||| ||||||      ||||||||||||||||||||| |    
T  40846542 gcttctagtagataactcccgaaagtgc----ttttgtttaattttgattttgttactctggtagataact------agtgtatttttaaaattccgctt 40846631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 40609443 - 40609387
Alignment:
Q  170 gaggttcatttttaaaaatttcgattttatgcttctagtagataactcccgaaagtg 226  Q
    |||||||||||||||| ||||||||||| ||||||   |||||||||||||||||||    
T  40609443 gaggttcatttttaaacatttcgattttgtgcttccgctagataactcccgaaagtg 40609387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 8783628 - 8783703
Alignment:
Q  111 tttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaa 186  Q
    ||||||||||||||||||| |||||||||||||  ||||| |  ||||| ||| |||  ||| |||||||||||||    
T  8783628 tttaggccctccaaaattataaaattgtccttacaaacacatttggtagttaactactggagtttcatttttaaaa 8783703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 40608819 - 40608870
Alignment:
Q  240 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaa 291  Q
    |||||||||| |||||||| |||| ||||||| || ||||||||||||||||    
T  40608819 aattttgattatgttactccggtagataactattggaagtgtatttttaaaa 40608870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 7256231 - 7256114
Alignment:
Q  100 ctccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttat 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||| |||| |||||| ||||||||||| ||||||||| |    
T  7256231 ctccatatctctttaggcccttcaaaattacaaaattgtccttgataacacttccggtagttaactaccggaggtttatttttaaaaa-ttcgattttgt 7256133  T
Q  200 gcttctagtagataactcc 218  Q
     |||| |||| ||||||||    
T  7256132 tcttccagtaaataactcc 7256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 44260319 - 44260375
Alignment:
Q  103 catatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtag 159  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||| ||| ||||    
T  44260319 catatctctttagcccctctaaaattacaaaattgttcttaataacacgtcatgtag 44260375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 4262523 - 4262424
Alignment:
Q  118 cctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttatgcttctagtagataactc 217  Q
    |||| |||||||||||| |||||||||||||||| | | ||| ||| || | ||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  4262523 cctctaaaattacaaaactgtccttaataacactcctgatagttaactatcagaggttcatttttaaaaattttgattttgtgcttccagtagataactc 4262424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 4278326 - 4278212
Alignment:
Q  103 catatctctttaggccctcc-aaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttatgc 201  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||   |||| ||| |||| ||||||||||||  |||||||| | ||| |||    
T  4278326 catatctctttaggcccccctaaaattagaaaattgtccttaataacactt---gtagttaactaccggaggttcattttataaaatttcaaatttgtgc 4278230  T
Q  202 ttctagtagataactccc 219  Q
    ||| ||||||||||||||    
T  4278229 ttccagtagataactccc 4278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 4278175 - 4278121
Alignment:
Q  240 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaattc 294  Q
    ||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  4278175 aatttcgattttgttactccggtaaataactactgcaagtgtatttttaaaattc 4278121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 18703535 - 18703460
Alignment:
Q  111 tttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaa 186  Q
    ||||||||| ||||||||| ||||||||||||| |||||| || ||||| ||| || | |||||||||| ||||||    
T  18703535 tttaggccccccaaaattataaaattgtccttactaacacatctggtagttaactatcagaggttcattcttaaaa 18703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 7331135 - 7331212
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  7331135 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 7331212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 34747100 - 34747175
Alignment:
Q  105 tatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcattt 180  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| |   |||||||| |||| || ||||||||    
T  34747100 tatctctttaggcctcctaaaattacaaaattgtccttaataacacgttttgtagataactaccggatgttcattt 34747175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 29381459 - 29381397
Alignment:
Q  240 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaattccgcctttg 302  Q
    ||||| |||||||||||||||||| | |||||| | |||||||||||||||||| ||| ||||    
T  29381459 aatttcgattttgttactctggtaaacaactaccggaagtgtatttttaaaatttcgcttttg 29381397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 29380911 - 29381021
Alignment:
Q  179 ttttaaaaatttcgattttatgcttctagtagataactcccgaaagtgcnnnnnnnnnnnnaattttgattttgttactctggtacataactactgtaag 278  Q
    ||||||||||||| ||||| |||||| ||||||||||||||| ||||||            ||||| ||||||||||||  |||| |||||||| | |||    
T  29380911 ttttaaaaatttcaattttgtgcttccagtagataactcccggaagtgc----ttttttgaaatttagattttgttactgcggtagataactaccggaag 29381006  T
Q  279 tgtatttttaaaatt 293  Q
    |||||||||||||||    
T  29381007 tgtatttttaaaatt 29381021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 8492105 - 8492192
Alignment:
Q  102 ccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaattt 190  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||||| | |||||| ||| ||   || ||| ||||||||||||||    
T  8492105 ccatatctctttaaaccc-ccaaaattacaaaattgtctttaataacacattaggtagttaactattggacgtttatttttaaaaattt 8492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 25735476 - 25735393
Alignment:
Q  106 atctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatt 189  Q
    |||||||| ||||| | |||| ||| ||||||| ||||||||||| ||| |||||||| |||| || ||||||||  |||||||    
T  25735476 atctcttttggccccctaaaaatacgaaattgttcttaataacacatcatgtagataattaccggatgttcatttaaaaaaatt 25735393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 29380560 - 29380666
Alignment:
Q  81 tggaggtttctttttggggctccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcattt 180  Q
    ||||||||||||||| || | |  |||||||| ||| || ||||||||   |||||||| |||||||||||||   ||||||||||   |||||||||||    
T  29380560 tggaggtttctttttaggcccctgtatctcttcaggtccaccaaaattgtcaaattgtctttaataacacttctaatagataaatattggaggttcattt 29380659  T
Q  181 ttaaaaa 187  Q
    || ||||    
T  29380660 tttaaaa 29380666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 29381501 - 29381448
Alignment:
Q  143 aataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgatttt 197  Q
    ||||||||||| |||||||||||| | || |||||||||| ||||||||||||||    
T  29381501 aataacacttccggtagataaatatcggatgttcattttt-aaaatttcgatttt 29381448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 2520348 - 2520271
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  2520348 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 2520271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 26275452 - 26275516
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacc 168  Q
    |||||||||||||||||| |||| ||||||| |  |||| |||| ||||| ||||||||||||||    
T  26275452 atatctctttaggccctctaaaaatacaaaaataacctttataagacttccggtagataaatacc 26275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 29982175 - 29982252
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  29982175 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 29982252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 37644429 - 37644506
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  37644429 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 37644506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 32517603 - 32517526
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  32517603 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 32517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 45880779 - 45880856
Alignment:
Q  104 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 181  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  45880779 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 45880856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University