View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12026_high_11 (Length: 301)

Name: NF12026_high_11
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12026_high_11
NF12026_high_11
[»] chr1 (14 HSPs)
chr1 (1-271)||(34142156-34142428)
chr1 (221-267)||(10356197-10356243)
chr1 (229-267)||(10841901-10841939)
chr1 (221-267)||(12213994-12214040)
chr1 (221-267)||(15382833-15382879)
chr1 (221-267)||(17651394-17651440)
chr1 (221-267)||(28832185-28832231)
chr1 (209-267)||(19620577-19620637)
chr1 (226-267)||(27172741-27172782)
chr1 (226-267)||(30279639-30279680)
chr1 (226-267)||(32209857-32209898)
chr1 (221-265)||(17339218-17339262)
chr1 (221-265)||(27785982-27786026)
chr1 (219-267)||(28712547-28712595)
[»] chr2 (18 HSPs)
chr2 (209-271)||(15427689-15427753)
chr2 (226-270)||(9547428-9547472)
chr2 (228-267)||(8761585-8761624)
chr2 (226-265)||(19159944-19159983)
chr2 (221-267)||(2256972-2257018)
chr2 (233-271)||(7276629-7276667)
chr2 (221-267)||(16204831-16204877)
chr2 (221-271)||(19549433-19549483)
chr2 (221-267)||(33063987-33064033)
chr2 (221-267)||(34977205-34977251)
chr2 (221-271)||(36359311-36359361)
chr2 (226-267)||(9964492-9964533)
chr2 (228-269)||(10991541-10991582)
chr2 (226-267)||(22523031-22523072)
chr2 (226-267)||(37119277-37119318)
chr2 (226-267)||(40967390-40967431)
chr2 (226-270)||(5168598-5168642)
chr2 (221-265)||(12599879-12599923)
[»] chr8 (14 HSPs)
chr8 (221-267)||(40795378-40795424)
chr8 (226-267)||(17062358-17062399)
chr8 (226-267)||(17585959-17586000)
chr8 (221-273)||(1877676-1877728)
chr8 (221-267)||(2554226-2554272)
chr8 (211-268)||(7987732-7987790)
chr8 (221-267)||(17898080-17898126)
chr8 (221-263)||(24195254-24195296)
chr8 (221-267)||(27718908-27718954)
chr8 (221-267)||(32421570-32421616)
chr8 (221-267)||(39433411-39433457)
chr8 (226-267)||(10982727-10982768)
chr8 (226-267)||(13357460-13357501)
chr8 (221-266)||(29546895-29546940)
[»] chr6 (9 HSPs)
chr6 (221-267)||(13496117-13496163)
chr6 (228-267)||(24212560-24212599)
chr6 (226-267)||(361755-361796)
chr6 (228-273)||(6799635-6799680)
chr6 (226-267)||(12904336-12904377)
chr6 (226-267)||(28951400-28951441)
chr6 (229-265)||(2445302-2445338)
chr6 (226-262)||(3373400-3373436)
chr6 (212-267)||(18256884-18256940)
[»] chr5 (15 HSPs)
chr5 (221-267)||(13864345-13864391)
chr5 (221-265)||(20721053-20721097)
chr5 (226-269)||(31159428-31159471)
chr5 (221-267)||(8545003-8545049)
chr5 (221-267)||(13796331-13796377)
chr5 (221-267)||(18589881-18589927)
chr5 (221-267)||(41650953-41650999)
chr5 (226-267)||(5001556-5001597)
chr5 (218-267)||(11720895-11720944)
chr5 (226-267)||(16076432-16076473)
chr5 (226-267)||(17046335-17046376)
chr5 (226-267)||(20927640-20927681)
chr5 (226-267)||(33369432-33369473)
chr5 (218-267)||(33645700-33645749)
chr5 (226-267)||(39610360-39610401)
[»] chr4 (15 HSPs)
chr4 (221-267)||(7371562-7371608)
chr4 (219-271)||(27537745-27537797)
chr4 (228-267)||(6459945-6459984)
chr4 (227-270)||(9196211-9196254)
chr4 (228-267)||(24837494-24837533)
chr4 (221-271)||(11949777-11949827)
chr4 (221-267)||(19124636-19124682)
chr4 (221-267)||(24885814-24885860)
chr4 (221-267)||(40070982-40071028)
chr4 (221-267)||(43034356-43034402)
chr4 (228-265)||(2422701-2422738)
chr4 (226-267)||(35021486-35021527)
chr4 (226-267)||(40847086-40847127)
chr4 (226-267)||(47007321-47007362)
chr4 (230-266)||(39146644-39146680)
[»] chr7 (16 HSPs)
chr7 (226-267)||(429197-429238)
chr7 (210-267)||(8883554-8883611)
chr7 (227-270)||(39043753-39043796)
chr7 (221-267)||(30793060-30793106)
chr7 (221-271)||(47342448-47342498)
chr7 (226-267)||(3672571-3672612)
chr7 (226-267)||(5317307-5317348)
chr7 (226-267)||(22991410-22991451)
chr7 (218-263)||(23413057-23413102)
chr7 (226-267)||(28200404-28200445)
chr7 (226-267)||(32315224-32315265)
chr7 (226-271)||(32855517-32855562)
chr7 (226-267)||(35142168-35142209)
chr7 (218-267)||(48065203-48065252)
chr7 (228-268)||(15015241-15015281)
chr7 (227-267)||(47960897-47960937)
[»] chr3 (13 HSPs)
chr3 (222-267)||(5941309-5941354)
chr3 (231-268)||(42784957-42784994)
chr3 (228-267)||(33404229-33404268)
chr3 (221-267)||(7824808-7824854)
chr3 (221-267)||(10843795-10843841)
chr3 (221-267)||(19468452-19468498)
chr3 (221-267)||(38130973-38131019)
chr3 (221-262)||(1111855-1111896)
chr3 (226-267)||(8942018-8942059)
chr3 (226-271)||(29631183-29631228)
chr3 (221-266)||(49975819-49975864)
chr3 (226-267)||(51882219-51882260)
chr3 (229-269)||(39100438-39100478)
[»] scaffold0118 (1 HSPs)
scaffold0118 (221-267)||(45413-45459)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 34142156 - 34142428
Alignment:
Q  1 agaccgtactcactaaatttagtcaaatgtgagaataattaggagctaggaaaataatagtggaaatgtgtttataatcactaaattaatcagcccatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34142156 agaccgtactcactaaatttagtcaaatgtgagaataattaggagctaggaaaataatagtggaaatgtgtttataatcactaaattaatcagtccatgc 34142255  T
Q  101 atgagtgcaaaattagaatgagggcaagatggtaatatcaacaaacgacaaagagcatattagagatagtacaatgagtaaacaaccattttcata-nnn 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  34142256 atgagtgcaaaattagaacgagggcaagatggtaatatcaacaaacgacaaagagcatattagagatagtacaatgagtaaacaaccattttcatatttt 34142355  T
Q  200 nnnnggctcagatttgaac-ccgaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
        |||||||||| |||| || ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  34142356 ttttggctcagattcgaactccaaccttgcatatattatgtattgtgcataccaactgagctaagctcatgag 34142428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 10356197 - 10356243
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  10356197 gaccgtgcatatattatgcattgtccataccaactgagttaagctca 10356243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 10841939 - 10841901
Alignment:
Q  229 atatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  10841939 atatattatgcattgtccatatcaactgagttaagctca 10841901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 12214040 - 12213994
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  12214040 gaccttgcatatattatgtattgttcctatcaactgagctaagctca 12213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 15382833 - 15382879
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  15382833 gaccttgcatatattatacattgttcatatcaactgagttaagctca 15382879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 17651394 - 17651440
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||| ||||||||||| |||||||||| |||||||||||    
T  17651394 gaccttgcatattttatgtattgtccatatcaacttagttaagctca 17651440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 28832185 - 28832231
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  28832185 gaccttgcatatattatgcattgttcataccaactgagttaagctca 28832231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 19620637 - 19620577
Alignment:
Q  209 agatttgaaccc--gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||  |||| ||||||||||||||||||| | || |||||||| ||||||||    
T  19620637 agatttgaaccccggaccttgcatatattatgtattgtccttaccaactgagctaagctca 19620577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 27172741 - 27172782
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||||| |||| |||| |||||||||||||||||    
T  27172741 tgcatatattatgttttgtccataccaactgagttaagctca 27172782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 30279639 - 30279680
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  30279639 tgcatatattatgtattgtacctatcaactgagctaagctca 30279680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 32209857 - 32209898
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  32209857 tgcatatattatgtattgttcctatcaactgaggtaagctca 32209898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 17339262 - 17339218
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||| ||| ||||||||||||||| |||| |||||||||||||||    
T  17339262 gaccttgcttatattatgtattgttcataccaactgagttaagct 17339218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 27785982 - 27786026
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||| ||||||||||||||||||| || | |||||||||||||||    
T  27785982 gaccttgcatatattatgtattgttcaaaccaactgagttaagct 27786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 28712547 - 28712595
Alignment:
Q  219 ccgaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||| ||||||||||||| |||||||||| |||||||| || |||||    
T  28712547 ccgaccttgcatatattatgcattgtgcataacaactgagctatgctca 28712595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 15427753 - 15427689
Alignment:
Q  209 agatttgaaccc--gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    ||||||||||||  |||| |||||||||||| |||||| ||||||||||||| ||||||||||||    
T  15427753 agatttgaaccctagaccttgcatatattatatattgtccatatcaactgagctaagctcatgag 15427689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 9547428 - 9547472
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctcatga 270  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  9547428 tgcatatattatgcattgtccatatcaactgagttaagcttatga 9547472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 8761585 - 8761624
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8761585 catatattatgtattgtccataccaactgagttaagctca 8761624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 19159983 - 19159944
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagct 265  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  19159983 tgcatatattatgcattgttcatatcaactgagttaagct 19159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 2257018 - 2256972
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  2257018 gaccttgcatatattatgcattgtccataccaactgagttaagctca 2256972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 7276629 - 7276667
Alignment:
Q  233 attatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  7276629 attatgtattgtccctatcaactgagttaagctcatgag 7276667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 16204831 - 16204877
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  16204831 gaccttgcatatattatgcattgtccttatcaactgagttaagctca 16204877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 19549483 - 19549433
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||| ||||||||||||| ||||| |||| || ||||||||||||||||||    
T  19549483 gaccttgcatatattatgcattgttcataccagctgagttaagctcatgag 19549433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 33064033 - 33063987
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| ||||||||||||| ||||||||    
T  33064033 gaccttgcatatattatgcattgtccatatcaactgagctaagctca 33063987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 34977251 - 34977205
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  34977251 gaccttgcatatattatgcattgtccataccaactgagttaagctca 34977205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 36359361 - 36359311
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||| ||||||||||||| ||||| || |||||| ||||||||||||||||    
T  36359361 gaccttgcatatattatgcattgtccaaatcaaccgagttaagctcatgag 36359311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 9964533 - 9964492
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||    
T  9964533 tgcatatattacgtattgttcatatcaactgagttaaactca 9964492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 10991582 - 10991541
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctcatg 269  Q
    ||||||||||||||||| | || |||||||||||||||||||    
T  10991582 catatattatgtattgtccttaccaactgagttaagctcatg 10991541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 22523031 - 22523072
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  22523031 tgcatatattatgtattgtccataccaactgagctaagctca 22523072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 37119277 - 37119318
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||    
T  37119277 tgcatatattatgcattgttcatatcaactgagttaaactca 37119318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 40967390 - 40967431
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| | ||||||||||||||||||||    
T  40967390 tgcatatattatgcattgtccttatcaactgagttaagctca 40967431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 5168598 - 5168642
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctcatga 270  Q
    ||||||||||||| ||| | | |||||||||||||||||||||||    
T  5168598 tgcatatattatgcattatccctatcaactgagttaagctcatga 5168642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 12599879 - 12599923
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||    
T  12599879 gaccttgcatatattatgtattgtccatactaactgagttaagct 12599923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 40795424 - 40795378
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||||    
T  40795424 gaccttgcatatattatgtattgttcataccaactgagttaagctca 40795378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 17062358 - 17062399
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  17062358 tgcatatattatgtattgtctatatcaactgagttaagctca 17062399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 17586000 - 17585959
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  17586000 tgcatatattatgtattgtctatatcaactgagttaagctca 17585959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 1877676 - 1877728
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgagta 273  Q
    |||| ||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  1877676 gaccttgcatatattatgcattgtctatatcaactgagttaagctcacgagta 1877728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 2554226 - 2554272
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||| ||||||||||| ||||||||||||| ||||||||    
T  2554226 gaccttgcatattttatgtattgtccatatcaactgagctaagctca 2554272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 7987732 - 7987790
Alignment:
Q  211 atttgaacccg-accatgcatatattatgtattgtgcatatcaactgagttaagctcat 268  Q
    ||||||||||| ||| ||||||||||||||||||| | || ||| ||||||||||||||    
T  7987732 atttgaacccggaccttgcatatattatgtattgtccttagcaattgagttaagctcat 7987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 17898126 - 17898080
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| |||||||||||||| |||| |||| |||||||||||||||||    
T  17898126 gaccttgcatatattatgttttgtccataccaactgagttaagctca 17898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 24195296 - 24195254
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaag 263  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||    
T  24195296 gaccttgcatatattatgtattgttcatatcaactgagctaag 24195254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 27718908 - 27718954
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| ||||||||||||| ||||||||    
T  27718908 gaccttgcatatattatgcattgtccatatcaactgagctaagctca 27718954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 32421616 - 32421570
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| |||||||||||| |||||| |||| |||||||||||||||||    
T  32421616 gaccttgcatatattatatattgtccataccaactgagttaagctca 32421570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 39433457 - 39433411
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||| ||||||||||| ||||||||||||| ||||||||    
T  39433457 gaccttgcatattttatgtattgttcatatcaactgagctaagctca 39433411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 10982768 - 10982727
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||| |||||| |||| |||||||||||||||||    
T  10982768 tgcatatattatatattgtccataccaactgagttaagctca 10982727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 13357460 - 13357501
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  13357460 tgcatatattatgcattgtccataccaactgagttaagctca 13357501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 29546940 - 29546895
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctc 266  Q
    |||| |||||||||||| |||||| | |||||||||||||||||||    
T  29546940 gaccttgcatatattatctattgtccctatcaactgagttaagctc 29546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 13496163 - 13496117
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  13496163 gaccttgcatatattatgcattgttcatatcaactgagttaagctca 13496117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 24212560 - 24212599
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  24212560 catatattatgcattgtccatatcaactgagttaagctca 24212599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 361796 - 361755
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  361796 tgcatatattatgcattgtccataccaactgagttaagctca 361755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 6799680 - 6799635
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctcatgagta 273  Q
    ||||||||||||||||| ||| | |||||||||||||||| |||||    
T  6799680 catatattatgtattgtccatgttaactgagttaagctcacgagta 6799635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 12904336 - 12904377
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||    
T  12904336 tgcatatattatgcattgttcatatcaactgaggtaagctca 12904377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 28951441 - 28951400
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  28951441 tgcatatattatgcattgttcataccaactgagttaagctca 28951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 2445338 - 2445302
Alignment:
Q  229 atatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  2445338 atatattatgcattgttcatatcaactgagttaagct 2445302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 3373400 - 3373436
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaa 262  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  3373400 tgcatatattatgcattgtccatatcaactgagttaa 3373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 18256940 - 18256884
Alignment:
Q  212 tttgaacccg-accatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||| ||| ||||||||||||| ||||| | ||||||||||| ||||||||    
T  18256940 tttgaacccggaccttgcatatattatgcattgtccttatcaactgagctaagctca 18256884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 13864391 - 13864345
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||||    
T  13864391 gaccttgcatatattatgtattgttcataccaactgagttaagctca 13864345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 20721097 - 20721053
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||    
T  20721097 gaccttgcatatattatgtattgtccataccaactgagttaagct 20721053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 31159471 - 31159428
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctcatg 269  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  31159471 tgcatatattatgtattgtctttatcaactgagttaagctcatg 31159428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 8545003 - 8545049
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  8545003 gaccttgcatatattatgcattgtccttatcaactgagttaagctca 8545049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 13796377 - 13796331
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||||||    
T  13796377 gaccttgcatatattatgcattgttcatatcgactgagttaagctca 13796331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 18589881 - 18589927
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  18589881 gaccttgcatatattatgcattgttcataccaactgagttaagctca 18589927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 41650953 - 41650999
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  41650953 gaccttgcatatattatgcattgtccataccaactgagttaagctca 41650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 5001597 - 5001556
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| | ||||||| ||||||||||||    
T  5001597 tgcatatattatgtattgtccttatcaaccgagttaagctca 5001556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 11720944 - 11720895
Alignment:
Q  218 cccgaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||| ||||||||||||| ||||| | || |||||||||||||||||    
T  11720944 cccgaccttgcatatattatgcattgtccctaccaactgagttaagctca 11720895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 16076473 - 16076432
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  16076473 tgcatatattatgcattgtccatatcagctgagttaagctca 16076432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 17046376 - 17046335
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  17046376 tgcatatattatgcattgtccataccaactgagttaagctca 17046335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 20927681 - 20927640
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  20927681 tgcatatattatgtattgtccataccaactgagctaagctca 20927640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 33369432 - 33369473
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||| |||||||||||| |||| |||||||||||||||||    
T  33369432 tgcatacattatgtattgttcataccaactgagttaagctca 33369473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 33645700 - 33645749
Alignment:
Q  218 cccgaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||| ||||||||||||  ||||| |||| |||||||||||||||||    
T  33645700 cccgaccttgcatatattatacattgtccataccaactgagttaagctca 33645749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 39610360 - 39610401
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||    
T  39610360 tgcatatattatgcattgtccatatcaactgagctaagctca 39610401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 7371562 - 7371608
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||    
T  7371562 gaccttgcatatattatgtattgtccttatcaactgagttaagctca 7371608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 27537797 - 27537745
Alignment:
Q  219 ccgaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||||| ||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  27537797 ccgaccttgcatatattatgcattgtccataccaattgagttaagctcatgag 27537745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 6459945 - 6459984
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  6459945 catatattatgcattgtccatatcaactgagttaagctca 6459984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 9196254 - 9196211
Alignment:
Q  227 gcatatattatgtattgtgcatatcaactgagttaagctcatga 270  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||    
T  9196254 gcatatattatgcattgtccatatcaactaagttaagctcatga 9196211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 24837494 - 24837533
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  24837494 catatattatgtattgttcatatcaactaagttaagctca 24837533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 11949777 - 11949827
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||| ||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  11949777 gaccttgcatatattatgcattgtccataccaactgagctaagctcatgag 11949827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 19124636 - 19124682
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| |||||||||||||||||||   ||||||||||||||||||||    
T  19124636 gaccttgcatatattatgtattgtctttatcaactgagttaagctca 19124682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 24885814 - 24885860
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||| ||||||||||| |||| |||||||||||||||||    
T  24885814 gaccttgcatattttatgtattgtccataccaactgagttaagctca 24885860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 40070982 - 40071028
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  40070982 gaccttgcatatattatgcattgttcataccaactgagttaagctca 40071028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 43034356 - 43034402
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  43034356 gaccttgcatatattatgcattgtccataccaactgagttaagctca 43034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 2422701 - 2422738
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagct 265  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  2422701 catatattatatattgtccatatcaactgagttaagct 2422738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 35021486 - 35021527
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  35021486 tgcatattttatgtattgtccatatcaactgagctaagctca 35021527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 40847086 - 40847127
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  40847086 tgcatatattatgtattgtctctatcaactgagttaagctca 40847127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 47007321 - 47007362
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  47007321 tgcatatattatgtattgtccctaacaactgagttaagctca 47007362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 39146680 - 39146644
Alignment:
Q  230 tatattatgtattgtgcatatcaactgagttaagctc 266  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  39146680 tatattatgcattgtccatatcaactgagttaagctc 39146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 429197 - 429238
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  429197 tgcatatattatgtattatccatatcaactgagttaagctca 429238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 8883611 - 8883554
Alignment:
Q  210 gatttgaacccgaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| |||||||||| |||| |||||||| ||||| |||| |||||||||||||||||    
T  8883611 gattcgaacccgaccttgcacatattatgcattgtccataccaactgagttaagctca 8883554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 39043796 - 39043753
Alignment:
Q  227 gcatatattatgtattgtgcatatcaactgagttaagctcatga 270  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||    
T  39043796 gcatatattatgcattgtccataccaactgagttaagctcatga 39043753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 30793060 - 30793106
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| |||| ||||| |||| |||||||||||||||||    
T  30793060 gaccatgcatatactatgcattgtccataccaactgagttaagctca 30793106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 47342448 - 47342498
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    |||| ||||||||||||| ||||| || | |||||||||||||||||||||    
T  47342448 gaccttgcatatattatgcattgtccaaaccaactgagttaagctcatgag 47342498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 3672571 - 3672612
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||    
T  3672571 tgcatatattatgtattgtccatatcaactgagctaaactca 3672612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 5317307 - 5317348
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||| | ||||||||||||||||||||||    
T  5317307 tgcatatattatgcattttccatatcaactgagttaagctca 5317348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 22991410 - 22991451
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  22991410 tgcatatattatgcattgtccataccaactgagttaagctca 22991451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 23413057 - 23413102
Alignment:
Q  218 cccgaccatgcatatattatgtattgtgcatatcaactgagttaag 263  Q
    ||||||| ||||||||||||| ||||| |||| |||||||||||||    
T  23413057 cccgaccttgcatatattatgcattgtccataccaactgagttaag 23413102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 28200404 - 28200445
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  28200404 tgcatatattatgtattgttcctaccaactgagttaagctca 28200445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 32315265 - 32315224
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  32315265 tgcatatattatgtaatgtccttatcaactgagttaagctca 32315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 32855562 - 32855517
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||    
T  32855562 tgcatatattatgcattattcatatcaactgagttaagttcatgag 32855517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 35142168 - 35142209
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||    
T  35142168 tgcatatattatgcattgtccatatcaactgagctaagctca 35142209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 48065252 - 48065203
Alignment:
Q  218 cccgaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||| ||||||||||||| ||||| |||| ||| |||||||||||||    
T  48065252 cccgaccttgcatatattatgaattgtccataccaattgagttaagctca 48065203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 15015281 - 15015241
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctcat 268  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  15015281 catatattatgcattgttcttatcaactgagttaagctcat 15015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 47960937 - 47960897
Alignment:
Q  227 gcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  47960937 gcatatattatgtattgtccttatcaattgagttaagctca 47960897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 5941309 - 5941354
Alignment:
Q  222 accatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  5941309 accatgcatatattatgcattgttcataccaactgagttaagctca 5941354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 42784994 - 42784957
Alignment:
Q  231 atattatgtattgtgcatatcaactgagttaagctcat 268  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42784994 atattatgtattgtccatatcaactgagttaagctcat 42784957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 33404268 - 33404229
Alignment:
Q  228 catatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  33404268 catatattatgtattgtccatatcaactgagctaagctca 33404229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 7824854 - 7824808
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| |||||||||||||||||||  |||||||||||||||| ||||    
T  7824854 gaccttgcatatattatgtattgtctatatcaactgagttaaactca 7824808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 10843795 - 10843841
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||||    
T  10843795 gaccttgcatatattatgtattattcataccaactgagttaagctca 10843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 19468498 - 19468452
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  19468498 gaccttgcatatattatgcattgtccataccaactgagttaagctca 19468452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 38130973 - 38131019
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  38130973 gaccttgcatatattatgcattgtccataccaactgagttaagctca 38131019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 1111855 - 1111896
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaa 262  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  1111855 gaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 8942059 - 8942018
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  8942059 tgcatatattatgcattgttcataccaactgagttaagctca 8942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 29631228 - 29631183
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctcatgag 271  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  29631228 tgcatatattatgcattgtccataccaactgagctaagctcatgag 29631183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 49975819 - 49975864
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctc 266  Q
    |||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  49975819 gaccttgcatatattatgcattgtccataacaactgagttaagctc 49975864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 51882219 - 51882260
Alignment:
Q  226 tgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  51882219 tgcatatattatgcattgtccataccaactgagttaagctca 51882260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 39100438 - 39100478
Alignment:
Q  229 atatattatgtattgtgcatatcaactgagttaagctcatg 269  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  39100438 atatattatgcattgttcttatcaactgagttaagctcatg 39100478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 45459 - 45413
Alignment:
Q  221 gaccatgcatatattatgtattgtgcatatcaactgagttaagctca 267  Q
    |||| ||||||||||||||||||| || | |||||||||||||||||    
T  45459 gaccttgcatatattatgtattgtccaaaccaactgagttaagctca 45413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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