View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12026_high_12 (Length: 277)
Name: NF12026_high_12
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 25602799 - 25602652
Alignment:
| Q |
112 |
tgaacagatgaataccgtctgaacattagtaacaataatattagaataaatttattagtaatgtgtattattattttaaagaatttagttgcaatttatt |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25602799 |
tgaacagatgaatatcgtctgaacattagtaacaataatattagaataaatttattagtaatgtgtattattattttaaagaatttagttgcaatttatt |
25602700 |
T |
|
| Q |
212 |
ttcgttaagtaatttagtggctgaagctcacacattttaaatatgaat |
259 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
25602699 |
ttcgttaagtaatttagtggttggagctcacacattttaaatatgaat |
25602652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 5658545 - 5658580
Alignment:
| Q |
218 |
aagtaatttagtggctgaagctcacacattttaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5658545 |
aagtaatttagtggctgaagctcacatattttaaat |
5658580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 40200828 - 40200798
Alignment:
| Q |
226 |
tagtggctgaagctcacacattttaaatatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40200828 |
tagtggctgaagctcacacattttaaatatg |
40200798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 1553337 - 1553297
Alignment:
| Q |
218 |
aagtaatttagtggctgaagctcacacattttaaatatgaa |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
1553337 |
aagtaatttagtggctaaagctcacacaatttaaatgtgaa |
1553297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 29550870 - 29550830
Alignment:
| Q |
218 |
aagtaatttagtggctgaagctcacacattttaaatatgaa |
258 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
29550870 |
aagtaatttagtggctgaagctcccacactttaaatatgaa |
29550830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 5962920 - 5962872
Alignment:
| Q |
210 |
ttttcgttaagtaatttagtggctgaagctcacacattttaaatatgaa |
258 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
5962920 |
tttttgttaagtagtctagtggctgaaactcacacattttaaatgtgaa |
5962872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 44615800 - 44615760
Alignment:
| Q |
218 |
aagtaatttagtggctgaagctcacacattttaaatatgaa |
258 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
44615800 |
aagtagtttagtggctgaaactcacacattttaaatgtgaa |
44615760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 3039159 - 3039199
Alignment:
| Q |
218 |
aagtaatttagtggctgaagctcacacattttaaatatgaa |
258 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3039159 |
aagtagtttagtggttgaagctcacacattttaaatatgaa |
3039199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 3229670 - 3229699
Alignment:
| Q |
224 |
tttagtggctgaagctcacacattttaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3229670 |
tttagtggctgaagctcacacattttaaat |
3229699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 13763875 - 13763846
Alignment:
| Q |
224 |
tttagtggctgaagctcacacattttaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13763875 |
tttagtggctgaagctcacacattttaaat |
13763846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 23587943 - 23587911
Alignment:
| Q |
217 |
taagtaatttagtggctgaagctcacacatttt |
249 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
23587943 |
taagtaatctagtggctgaagctcacacatttt |
23587911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University