View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12026_high_14 (Length: 246)
Name: NF12026_high_14
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 43533344 - 43533589
Alignment:
| Q |
1 |
gcatacacaagtaatattgaaaattttaactgatagctaatacggcgaattcagattaaaattaactaaaggaacatggttagggccagttcgtattaac |
100 |
Q |
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| T |
43533344 |
gcatacacaagtaatattgaaaattttaactgatagctaatacggagaattcagattaaaattaactaaaggaacatggttagggccagttcgtattaac |
43533443 |
T |
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| Q |
101 |
ttatttgagcttgacatgttcataagctgttaaactcttcagtatatcttatgaaaattatttatagctcatatggatacattttaactttattttagtt |
200 |
Q |
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| T |
43533444 |
ttatttgagcttgacatgttcataagctgttaaactcttcagtatatcttatgaaaattatttatagctcatatggatacattttaactttattttagtt |
43533543 |
T |
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| Q |
201 |
tttgatttagaaataacttatagtaagcacttatatgataaatgtt |
246 |
Q |
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| T |
43533544 |
tttgatttagaaataacttatagtaagcacttatatgataaatgtt |
43533589 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 49586984 - 49587057
Alignment:
| Q |
164 |
atagctcatatggatacattttaactttattttagtttttgatttagaaataacttatagtaagcacttatatg |
237 |
Q |
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| T |
49586984 |
atagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttatagtaagcacttatatg |
49587057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 992093 - 991993
Alignment:
| Q |
143 |
tatatcttatgaaaattatttatagctcatatggatacattttaactttattttagtttttgatttagaaataacttata-gtaagcacttatatgataa |
241 |
Q |
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| T |
992093 |
tatagcttatgaaaaaagtttataccttatatgaaaatattttgtctttattttattttttgttatagaaacaacttatacgtaagcacttatatgataa |
991994 |
T |
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| Q |
242 |
a |
242 |
Q |
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| T |
991993 |
a |
991993 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41981791 - 41981835
Alignment:
| Q |
179 |
acattttaactttattttagtttttgatttagaaataacttatag |
223 |
Q |
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| T |
41981791 |
acatattaactttattttatcttttgatatagaaataacttatag |
41981835 |
T |
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