View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12026_high_7 (Length: 374)

Name: NF12026_high_7
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12026_high_7
NF12026_high_7
[»] chr2 (1 HSPs)
chr2 (68-363)||(40049175-40049470)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 68 - 363
Target Start/End: Complemental strand, 40049470 - 40049175
Alignment:
Q  68 tatcacctcaaatttctatatttccctcgcgaaccaccaaaccatcttatgactcctatacaaaacagtatgttgaccaacaacaaatcggaaaacaaaa 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40049470 tatcacctcaaatttctatatttccctcgcgaatcaccaaaccatcttatgactcctatacaaaacagtatgttgaccaacaacaaatcggaaaacaaaa 40049371  T
Q  168 tatgaacaactaaaaatgatggagatgacacacaatttgattgtggaattcggtccattgtacctacatccgataatagtgtttggtttcattttgatca 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40049370 tatgaacaactaaaaatgatggagatgacacacaatttgattgtggaattcggtccattgtacctacatccgataatagtgtttggtttcattttgatca 40049271  T
Q  268 aacgttacctggagttacaagttataacatgagtttaaatactacgactcaattctgctccgctcaccggactttcggtttcactcactgcccttt 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40049270 aacgttacttggagttacaagttataacatgagtttaaatactacgactcaattctgctccgctcaccggacttttggtttcactcactgcccttt 40049175  T

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