View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12026_low_1 (Length: 765)

Name: NF12026_low_1
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12026_low_1
NF12026_low_1
[»] chr2 (4 HSPs)
chr2 (16-393)||(12916297-12916674)
chr2 (502-757)||(12915878-12916131)
chr2 (389-481)||(12916162-12916254)
chr2 (532-662)||(37089329-37089459)
[»] chr1 (10 HSPs)
chr1 (510-651)||(52841841-52841982)
chr1 (506-664)||(27925804-27925962)
chr1 (502-662)||(16131779-16131939)
chr1 (504-661)||(507826-507981)
chr1 (502-661)||(10531286-10531445)
chr1 (507-660)||(44758990-44759143)
chr1 (502-592)||(2902886-2902976)
chr1 (530-651)||(17110165-17110288)
chr1 (530-574)||(17110119-17110163)
chr1 (586-648)||(2903131-2903195)
[»] chr8 (4 HSPs)
chr8 (510-662)||(4533722-4533874)
chr8 (522-662)||(23665248-23665388)
chr8 (502-657)||(43134468-43134623)
chr8 (613-662)||(23665178-23665227)
[»] chr3 (4 HSPs)
chr3 (502-660)||(46615739-46615897)
chr3 (507-664)||(21459976-21460132)
chr3 (502-592)||(29085603-29085693)
chr3 (424-481)||(21459901-21459958)
[»] chr4 (6 HSPs)
chr4 (522-662)||(1363419-1363559)
chr4 (502-651)||(3222014-3222163)
chr4 (564-661)||(26892037-26892134)
chr4 (502-575)||(26893432-26893505)
chr4 (504-585)||(4521248-4521329)
chr4 (535-581)||(33470729-33470777)
[»] chr7 (4 HSPs)
chr7 (502-662)||(9568081-9568241)
chr7 (502-651)||(36721461-36721609)
chr7 (552-651)||(23671272-23671371)
chr7 (554-647)||(30060058-30060151)
[»] chr5 (1 HSPs)
chr5 (507-651)||(15401354-15401498)
[»] chr6 (2 HSPs)
chr6 (507-664)||(31257193-31257350)
chr6 (530-624)||(13493972-13494066)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 12916674 - 12916297
Alignment:
Q  16 agtttgcatatgtatccttacacattcccatcatatttctgagttttaataaatgcttcttaacttcaatgtctttgtcatcaaattagctatttggctt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12916674 agtttgcatatgtatccttacacattcccatcatatttctgagttttaataaatgcttcttaacttcaatgtctttgtcatcaaattagctatttggctt 12916575  T
Q  116 aatttaacttcaatagactctttcaaaggggactaataatcttacatatgtgatccacattgaatcaatttaacttcaatagactcttccaaacgggact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12916574 aatttaacttcaatagactctttcaaaggggactaataatcttacatatgtgatccacattgaattaatttaacttcaatagactcttccaaacgggact 12916475  T
Q  216 aataataaagggaacacacccctaagaagataataaatagggatacataataattatttagcctattttcagtataccnnnnnnnaatagaagatgatag 315  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||    
T  12916474 aataataaagtgaacacacccctaaaaagataataaatagggatacataataattatttagcctattttcagtatacctttttttaatagcagatgatag 12916375  T
Q  316 attttattgaataagatatgataaatataggttattttcgctgtctctataaatttactcttaatctatactaattat 393  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  12916374 attttattgaataagatatgataaatataggttattttcactgtctctataattttacttttaatctatactaattat 12916297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 502 - 757
Target Start/End: Complemental strand, 12916131 - 12915878
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12916131 aatgttagttatgctctaacttatgttaggagacaagctaatagaatcgtccataatcttgctcgagcgtctatattacatgctagttccactactttct 12916032  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatctttccctnnnnnnnnnnntctccttaaaataattttacttctaa 701  Q
    || |||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||           ||||||||||||||||||||||| ||    
T  12916031 ataattctccatattgtattcactttattattttggatgaaataaaatgagttatctttccct--aaaaaaaaatctccttaaaataattttacttccaa 12915934  T
Q  702 atcaattaattatgcttcggttgctaaaaatgtgtatttgtttaccctcctttgct 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12915933 atcaattaattatgcttcggttgctaaaaatgtgtatttgtttaccctcctttgct 12915878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 12916254 - 12916162
Alignment:
Q  389 attatggtatagtctattttcaatatatatagatctccttgataatagctcctatgtgaatgaattgagaattttattctctaatcgtaggac 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  12916254 attatggtatagtctattttcaatatatatagatctccttgataatagctcctatgtgaatgaattgagaattttactctctaattgtaggac 12916162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 532 - 662
Target Start/End: Original strand, 37089329 - 37089459
Alignment:
Q  532 agacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcactctatta 631  Q
    ||||||||||||||||||| ||| || ||| || |||| |||| |||||||||||||| || |||||||| |||| |||||| ||  |||||||||||||    
T  37089329 agacaagctaatagagtcgctcacaaccttactagagcatctagattacatgctagtcgcagtactttctttcatcctccattttgaattcactctatta 37089428  T
Q  632 ttttggatgaaatgaaatgaattatctttcc 662  Q
    |||| |||||||||||||||  |||||||||    
T  37089429 tttttgatgaaatgaaatgagctatctttcc 37089459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 510 - 651
Target Start/End: Complemental strand, 52841982 - 52841841
Alignment:
Q  510 ttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattct 609  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| || |||| ||||| ||    
T  52841982 ttatgctctagattatgttaggagacaagctaatagagtcgctcataatcttgcttgagcgtctatattacaagctagtcccagtattttcaatcatcct 52841883  T
Q  610 ccatattatattcactctattattttggatgaaatgaaatga 651  Q
    || |||| |||| |||||||||||||||||||||||||||||    
T  52841882 ccctattgtattgactctattattttggatgaaatgaaatga 52841841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 506 - 664
Target Start/End: Original strand, 27925804 - 27925962
Alignment:
Q  506 ttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatca 605  Q
    ||||||||||||||| |||| || ||||||||||||||||||||| ||||||  |||||||||||||||||||||||  |||||||| |  ||||| |||    
T  27925804 ttagttatgctctagcttatattaggagacaagctaatagagtcgctcataacattgctcgagcgtctatattacattgtagtcccagtcttttctttca 27925903  T
Q  606 ttctccatattatattcactctattattttggatgaaatgaaatgaattatctttccct 664  Q
    | |||| |||| |||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  27925904 tcctccctattgtattgactctattatttttgatgaaatgaaatgagttatctttccct 27925962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 502 - 662
Target Start/End: Original strand, 16131779 - 16131939
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    |||||| |||||||||||  ||||||| | |||||| |||||||| ||   ||||||||||| | | |||||||||||||||||||||||||||||||      
T  16131779 aatgtttgttatgctctaacttatgttagaagacaaactaatagaatcacgcataatcttgcacaaacgtctatattacatgctagtcccactacttttg 16131878  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatctttcc 662  Q
    ||| | ||||||||| ||| |||||||||||||||||||||| |||||||  |||||||||    
T  16131879 atcgtcctccatattgtatccactctattattttggatgaaaagaaatgagctatctttcc 16131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 504 - 661
Target Start/End: Original strand, 507826 - 507981
Alignment:
Q  504 tgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctat 603  Q
    ||||||||||||||||| |||| | |  |||||||| |||||||| |||||||||||| || |||||||||||||| ||||||||||||  ||||  | |    
T  507826 tgttagttatgctctagcttatataga-agacaagcaaatagagttgttcataatcttactagagcgtctatattatatgctagtcccaaaactt--ttt 507922  T
Q  604 catt-ctccatattatattcactctattattttggatgaaatgaaatgaattatctttc 661  Q
    |||| |||||| |  | ||||||||||||||||||||| ||||||||||||||||||||    
T  507923 cattcctccatttagttttcactctattattttggatgcaatgaaatgaattatctttc 507981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 502 - 661
Target Start/End: Complemental strand, 10531445 - 10531286
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    ||||||||||||||||||  |||| ||  ||||||| |||||| ||||| |||||| ||| ||||||||||||||||| ||| |||||||| ||||||||    
T  10531445 aatgttagttatgctctaacttatattatgagacaaactaatatagtcgctcataaccttactcgagcgtctatattatatgttagtcccaatactttct 10531346  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatctttc 661  Q
      ||| ||||  ||| |||||| | || |||||| ||| ||||||||||||||| |||||    
T  10531345 tgcatcctccggattgtattcattataatattttagatcaaatgaaatgaattacctttc 10531286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 660
Target Start/End: Original strand, 44758990 - 44759143
Alignment:
Q  507 tagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcat 606  Q
    |||||||||||||| |||| ||  |||| ||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| | ||    
T  44758990 tagttatgctctagcttatattaagagataaggtaatatagtcgctcataaccttgctcgagcgtctatattacatgctagtcccagtattttctcttat 44759089  T
Q  607 tctccatattatattcactctattattttggatgaaatgaaatgaattatcttt 660  Q
     || |  ||| |||||||| || |||||||||| |||| |||||| ||| ||||    
T  44759090 ccttccgattgtattcactataatattttggataaaatcaaatgagttaccttt 44759143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 502 - 592
Target Start/End: Original strand, 2902886 - 2902976
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtccca 592  Q
    |||| ||| ||||| |||| ||||||| |||||||| |||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  2902886 aatgataggtatgccctagcttatgtttggagacaaactaatatagtcgctcataaccttgctcgagcatctatattacatgctagtccca 2902976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 651
Target Start/End: Original strand, 17110165 - 17110288
Alignment:
Q  530 ggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcactc--t 627  Q
    |||||||| |||||||||||| ||||||||||||||||| || || || ||||||||||| || || ||||| || | |||| |||| |||| ||||  |    
T  17110165 ggagacaaactaatagagtcgctcataatcttgctcgagggtttacatcacatgctagtctcaatattttctttcctcctccctattgtattaactctat 17110264  T
Q  628 attattttggatgaaatgaaatga 651  Q
    ||||||||||||||||| ||||||    
T  17110265 attattttggatgaaataaaatga 17110288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 574
Target Start/End: Original strand, 17110119 - 17110163
Alignment:
Q  530 ggagacaagctaatagagtcgttcataatcttgctcgagcgtcta 574  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  17110119 ggagacaaactaatagagtcgctcataatcttgctcgagcgtcta 17110163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 648
Target Start/End: Original strand, 2903131 - 2903195
Alignment:
Q  586 agtcccactactttctatcat--tctccatattatattcactctattattttggatgaaatgaaa 648  Q
    ||||||| || ||||||||||  |||||  ||||||||||||||| |||||| ||||||||||||    
T  2903131 agtcccaatattttctatcatcctctcccgattatattcactctaatattttagatgaaatgaaa 2903195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 510 - 662
Target Start/End: Original strand, 4533722 - 4533874
Alignment:
Q  510 ttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattct 609  Q
    ||||||| ||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||    
T  4533722 ttatgctttagcttatgttaagagacaagctaatagagtcgctcataatcttgctcgagcgtctatattacatgctagtcccagtattttcaatcatcct 4533821  T
Q  610 ccatattatattcactctattattttggatgaaatgaaatgaattatctttcc 662  Q
    || |||| |||| ||||||||||||| |||||||||| |||| ||||||||||    
T  4533822 ccctattgtattgactctattattttagatgaaatgagatgagttatctttcc 4533874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 522 - 662
Target Start/End: Complemental strand, 23665388 - 23665248
Alignment:
Q  522 ttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatatt 621  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||| ||||| |||| |||| || |    
T  23665388 ttatgttaggagacaaactaatagagtcgctcataatcttgctcgagcgtctatattacatgctagttccagtattttcaatcatcctccctattgtaat 23665289  T
Q  622 cactctattattttggatgaaatgaaatgaattatctttcc 662  Q
     ||||||||||||| |||||||||||||||  |||||||||    
T  23665288 gactctattattttagatgaaatgaaatgagctatctttcc 23665248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 657
Target Start/End: Complemental strand, 43134623 - 43134468
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    |||| |||||||||||| | |||||||  |||||||| ||||||||||| ||||||||||||| ||| |  ||||||||||| ||||  || || ||||     
T  43134623 aatgctagttatgctctggcttatgttatgagacaagttaatagagtcgctcataatcttgcttgagtgattatattacatgttagtttcagtattttca 43134524  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatc 657  Q
      | | |||| |||| ||||  || ||||||| |||||||||||||||||| ||||    
T  43134523 tccgtcctccttattgtattggctttattattctggatgaaatgaaatgaactatc 43134468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 23665227 - 23665178
Alignment:
Q  613 tattatattcactctattattttggatgaaatgaaatgaattatctttcc 662  Q
    |||| |||| ||||||||||||| |||||||||||||||  |||||||||    
T  23665227 tattgtattgactctattattttagatgaaatgaaatgagctatctttcc 23665178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 502 - 660
Target Start/End: Complemental strand, 46615897 - 46615739
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    ||||||||||||| | ||| ||||||| | ||||||||||||| ||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |    
T  46615897 aatgttagttatggtatagcttatgttagaagacaagctaatatagtcgctcataatattgctcgagcttttataatacatgctagtcccactactttat 46615798  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatcttt 660  Q
    ||| |  |||||||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  46615797 atcgtcatccatattgtatccactctattattttggttgaaatgaaatgaattatcttt 46615739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 507 - 664
Target Start/End: Original strand, 21459976 - 21460132
Alignment:
Q  507 tagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcat 606  Q
    ||||||| ||||| |||||||| |||||||||||||||||| || ||||||||||| |||||| ||||||||||||| ||||| || ||||||||||  |    
T  21459976 tagttattctctaatttatgttaggagacaagctaatagagccgctcataatcttgatcgagcatctatattacatg-tagtctcattactttctattgt 21460074  T
Q  607 tctccatattatattcactctattattttggatgaaatgaaatgaattatctttccct 664  Q
     |||||||||| ||| ||||||||||| |||||||||||| | |||||||||| ||||    
T  21460075 cctccatattacatttactctattattgtggatgaaatgagacgaattatcttcccct 21460132  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 592
Target Start/End: Complemental strand, 29085693 - 29085603
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtccca 592  Q
    ||||||||||| | ||||| |||| || ||||||||||||||||||| | |||||| ||| ||||||||||||||||||||| || |||||    
T  29085693 aatgttagttacgttctagcttatattaggagacaagctaatagagttgctcataaccttactcgagcgtctatattacatgatactccca 29085603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 481
Target Start/End: Original strand, 21459901 - 21459958
Alignment:
Q  424 tccttgataatagctcctatgtgaatgaattgagaattttattctctaatcgtaggac 481  Q
    |||||| ||||||||||||| |||| || || ||||||||| |||||||| |||||||    
T  21459901 tccttggtaatagctcctatctgaacgagttaagaattttactctctaattgtaggac 21459958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 522 - 662
Target Start/End: Original strand, 1363419 - 1363559
Alignment:
Q  522 ttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatatt 621  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||  |||| |||| ||||    
T  1363419 ttatgttaggagacaagctaatagagtcgctcataatcttgctcgagcgtctatattacatgctagtcccaatattttcaatcaccctccctattgtatt 1363518  T
Q  622 cactctattattttggatgaaatgaaatgaattatctttcc 662  Q
     ||||||||||||| || ||||||||||||  |||||||||    
T  1363519 gactctattattttagaagaaatgaaatgagctatctttcc 1363559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 502 - 651
Target Start/End: Original strand, 3222014 - 3222163
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||| |||||||| ||||||| || ||||     
T  3222014 aatgttacttatgctctagtttatgttaggagacaagctaatagagtcactcataatcttgctcgagtatctattttacatgccagtcccagtattttca 3222113  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatga 651  Q
    ||||| |||| |||| |||| |||||||| |||| |||||||||||||||    
T  3222114 atcatcctccctattgtattgactctattgttttagatgaaatgaaatga 3222163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 661
Target Start/End: Complemental strand, 26892134 - 26892037
Alignment:
Q  564 tcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcactctattattttggatgaaatgaaatgaattatctttc 661  Q
    ||||||||||||||||||||||| ||||| || |||| | ||| ||||  ||| ||||||||||| |||||||||||||||||||||| ||| |||||    
T  26892134 tcgagcgtctatattacatgctaatcccagtattttcaagcatcctcccaattgtattcactctaatattttggatgaaatgaaatgagttacctttc 26892037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 575
Target Start/End: Complemental strand, 26893505 - 26893432
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctat 575  Q
    |||| ||||| |||||||| |||| || ||||||||||||||| ||||| |||||| |||||||||||||||||    
T  26893505 aatgctagttgtgctctagcttatattaggagacaagctaatatagtcgctcataaccttgctcgagcgtctat 26893432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 585
Target Start/End: Original strand, 4521248 - 4521329
Alignment:
Q  504 tgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgct 585  Q
    ||||||||||| | ||||||||||| |||||||| |||||| ||| ||||||||||||| |  |  ||||||||||||||||    
T  4521248 tgttagttatgttttagtttatgttaggagacaaactaatatagttgttcataatcttgttgaaatgtctatattacatgct 4521329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 33470729 - 33470777
Alignment:
Q  535 caagctaatagagtcgttcataatcttgc--tcgagcgtctatattaca 581  Q
    |||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  33470729 caagctaataaagtcgttcataatcttgctatagagcgtctatattaca 33470777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 502 - 662
Target Start/End: Original strand, 9568081 - 9568241
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    |||| |||||||||||||  ||||||| ||||||||||||| | ||||| |||||| ||| ||||| |||| |||||| ||||||||||||||| |||||    
T  9568081 aatgctagttatgctctaacttatgttaggagacaagctaacatagtcgctcataaccttactcgaacgtccatattatatgctagtcccactattttct 9568180  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatgaattatctttcc 662  Q
     |||| ||||  ||| |||| |||||| |||||| ||||||||||||||| ||| ||||||    
T  9568181 ttcatcctcccaattgtatttactctaatatttttgatgaaatgaaatgagttacctttcc 9568241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 502 - 651
Target Start/End: Original strand, 36721461 - 36721609
Alignment:
Q  502 aatgttagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttct 601  Q
    |||| ||||||| |||||| || | || ||||||||  ||||||||||||| ||| |||| || ||||||||||||||||||||| ||||| || |||||    
T  36721461 aatgctagttatactctagcttttattaggagacaaattaatagagtcgtt-atagtcttactagagcgtctatattacatgctaatcccattattttct 36721559  T
Q  602 atcattctccatattatattcactctattattttggatgaaatgaaatga 651  Q
    ||||| | || |||| |||||||| | ||||| |||||||||||||||||    
T  36721560 atcatccaccttattgtattcactatcttattatggatgaaatgaaatga 36721609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 651
Target Start/End: Original strand, 23671272 - 23671371
Alignment:
Q  552 tcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcactctattattttggatgaaatgaaatga 651  Q
    ||||| |||||||  | ||||||||||||||| |||||| | || ||||| |||| | || |||| |||||||||| ||||| |||||||||| ||||||    
T  23671272 tcatagtcttgctaaaacgtctatattacatgttagtcctagtattttctttcatccaccttattgtattcactctcttattatggatgaaataaaatga 23671371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 647
Target Start/End: Complemental strand, 30060151 - 30060058
Alignment:
Q  554 ataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcactctattattttggatgaaatgaa 647  Q
    ||||||||||| ||| || ||||||||||| |||||  | || |||||||||| | || |||| |||||||||| ||||| |||||||| ||||    
T  30060151 ataatcttgctagagtgtatatattacatgttagtctgagtattttctatcatccaccttattgtattcactctcttattatggatgaagtgaa 30060058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 507 - 651
Target Start/End: Original strand, 15401354 - 15401498
Alignment:
Q  507 tagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcat 606  Q
    |||| ||||||||| || | || |||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||||| || |||||| |||    
T  15401354 tagtcatgctctagcttttattaggagacaatctaatagagtcgctcataatcttgctagagcgtctatattacacgctagtcccaatattttctaccat 15401453  T
Q  607 tctccatattatattcactctattattttggatgaaatgaaatga 651  Q
     | || |||| |||||||| | ||||| |||||||||||||||||    
T  15401454 acaccttattgtattcactatcttattatggatgaaatgaaatga 15401498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 507 - 664
Target Start/End: Original strand, 31257193 - 31257350
Alignment:
Q  507 tagttatgctctagtttatgttgggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcat 606  Q
    |||||||||||||  || |||| | ||| ||||||| | ||||| |||||| |||||||||||||||||||||||| ||| || |  || ||||| ||||    
T  31257193 tagttatgctctaacttgtgttagaagataagctaacatagtcgctcataaccttgctcgagcgtctatattacatactattctcggtattttctttcat 31257292  T
Q  607 tctccatattatattcactctattattttggatgaaatgaaatgaattatctttccct 664  Q
     ||||  ||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||    
T  31257293 cctcccaattgtattcactctaatattttagatgaaatgaaataatttacctttccct 31257350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 624
Target Start/End: Original strand, 13493972 - 13494066
Alignment:
Q  530 ggagacaagctaatagagtcgttcataatcttgctcgagcgtctatattacatgctagtcccactactttctatcattctccatattatattcac 624  Q
    |||||||||||||||||||   ||||| ||||||  |||||| |||||||||||||||||||  || |||||||||| | || |||| |||||||    
T  13493972 ggagacaagctaatagagtttctcatagtcttgcaagagcgtttatattacatgctagtcccggtattttctatcatccaccttattgtattcac 13494066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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