View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12026_low_17 (Length: 238)
Name: NF12026_low_17
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 6019768 - 6019926
Alignment:
| Q |
44 |
attccattgtattatactaaaaattaacaaactcttgttatgcaccgcaaaataacctgacaatgtaccnnnnnnngagcgctgctatacaacacgacaa |
143 |
Q |
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| T |
6019768 |
attccattgtattatactaaaaattgacaaactcttgttatgcaccgcaaaataacctgacaatgtaccaaaaaaagagcgctgctatacaacacgacaa |
6019867 |
T |
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| Q |
144 |
gatcaacacacgacatgttgaacaacacccaattcactttataaatggatttcttttgg |
202 |
Q |
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| T |
6019868 |
gatcaacacacgacatgttgaacaacacccaattcactttataaatggatttcttttgg |
6019926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 48583949 - 48583899
Alignment:
| Q |
150 |
cacacgacatgttgaacaacacccaattcactttataaatggatttctttt |
200 |
Q |
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| T |
48583949 |
cacacaacatgttgaacaacacttaattcactttataaatggatttctttt |
48583899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 14526083 - 14526033
Alignment:
| Q |
150 |
cacacgacatgttgaacaacacccaattcactttataaatggatttctttt |
200 |
Q |
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| T |
14526083 |
cacacgacatgttcaacagcacgcaattcactttattaatggatttctttt |
14526033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 41312898 - 41312934
Alignment:
| Q |
120 |
gagcgctgctatacaacacgacaagatcaacacacga |
156 |
Q |
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| T |
41312898 |
gagcgctgctatacaacacgacaaactcaacacacga |
41312934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 41312948 - 41312988
Alignment:
| Q |
159 |
tgttgaacaacacccaattcactttataaatggatttcttt |
199 |
Q |
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| T |
41312948 |
tgttgaacgacacccaattcactttattaatagatttcttt |
41312988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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