View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12026_low_3 (Length: 629)
Name: NF12026_low_3
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Complemental strand, 2885992 - 2885395
Alignment:
| Q |
14 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885992 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
2885893 |
T |
|
| Q |
114 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtccccttacatccaaataactttca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885892 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttacagatcttatgtccccttacatccaaataactttca |
2885793 |
T |
|
| Q |
214 |
atgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaatcatccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttgaagc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2885792 |
atgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaatcatccaaacatatcttggtgcgaactcgagtaaacgagccaaacgacttgaagc |
2885693 |
T |
|
| Q |
314 |
cgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885692 |
cgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgca |
2885593 |
T |
|
| Q |
414 |
aatagcaaagctccaagaagaaaagcatcttcaggaagatctttcgatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgatctcatta |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885592 |
aatagcaaagctccaagaagaaaagcatcttcaggaagatctttcgatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgatctcatta |
2885493 |
T |
|
| Q |
514 |
cttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagctttacaccaacaatagcggttgttggtgg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
2885492 |
cttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaataggcgactaaagctttacaccaacaatggtggttgttggtgg |
2885395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Complemental strand, 2866806 - 2866205
Alignment:
| Q |
14 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
2866806 |
taggcacaatagtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgccgctagcctaatgtttctttatgcc |
2866707 |
T |
|
| Q |
114 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtcccctta-catccaaataactttc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| |||||||||||||| | ||||||||||||| |
|
|
| T |
2866706 |
atgtatgagcaattctgcccatctgatcttcataagtttgttgaaaagcacatgaacaaatttacagaccttatgtccccttaacgtccaaataactttt |
2866607 |
T |
|
| Q |
213 |
aatgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaatcatccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttgaag |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| || ||||||| ||||| ||| |
|
|
| T |
2866606 |
tatgaatcatcggacgagcgtctcaaacaaagcgaaacttacacaattatccaaacatatcttggtgctaactcgagtcaaagagccaagagacttaaag |
2866507 |
T |
|
| Q |
313 |
ccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgc |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
2866506 |
ccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttc |
2866407 |
T |
|
| Q |
413 |
aaatagcaaagctccaagaagaaaagcatcttcaggaagatc---tttcgatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgatctc |
509 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2866406 |
aaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatttcgatgtggtaagatacttaaccctaactttccacaaaaggcatcgcgatctc |
2866307 |
T |
|
| Q |
510 |
attacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagctttacaccaacaatagcggttgttggt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866306 |
attacttcctcttacatacaacatgtgttggaccaaggaaaggctgttatatttaagaataggcgactaaagctttacaccaacaatagcggttgttggt |
2866207 |
T |
|
| Q |
610 |
gg |
611 |
Q |
| |
|
|| |
|
|
| T |
2866206 |
gg |
2866205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 62 - 611
Target Start/End: Complemental strand, 2861380 - 2860826
Alignment:
| Q |
62 |
aatattgtcacaattaggctcaattgcggctagccttatgttt--gtttatgccatgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2861380 |
aatattgtcacaattaggctcaattgcggctagcctaatgtttttgtttatgccatgtatgagcaattctgcccatctgatcttcataagtttgttgaaa |
2861281 |
T |
|
| Q |
160 |
actacaaacacaaatttgcagatcttatgtccccttacatccaaataactttcaatgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaat |
259 |
Q |
| |
|
| ||| |||||||| |||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2861280 |
agcacatgaacaaatttacagaccttatgtccccttacgtcgaaataactttttatgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaat |
2861181 |
T |
|
| Q |
260 |
catccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagcatggac |
359 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| || ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2861180 |
tatccaaacatatcttggtgctaactcgagtcaaagagccaagagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggac |
2861081 |
T |
|
| Q |
360 |
gacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagatc---tt |
456 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| | || |
|
|
| T |
2861080 |
gacaaagaagagattgaggatgagttcaatggagtcaaagtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatt |
2860981 |
T |
|
| Q |
457 |
tcgatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctat |
556 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2860980 |
tcgatgtggtaagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctat |
2860881 |
T |
|
| Q |
557 |
tatatttaagaataggcgactaaagctttacaccaacaatagcggttgttggtgg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860880 |
tatatttaagaataggcgactaaagctttacaccaacaatagcggttgttggtgg |
2860826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 110 - 595
Target Start/End: Complemental strand, 2910744 - 2910271
Alignment:
| Q |
110 |
tgccatgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtccccttacatccaaataact |
209 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| |||||| ||| || | |||||||||| ||| |||||||||||| ||| |||||||| | |
|
|
| T |
2910744 |
tgccttgtatgagcaattctgcccttctgatcttcgtagatttgttcgaaaataaacgcacaaatttgtagaccttatgtcccctcacagccaaataagt |
2910645 |
T |
|
| Q |
210 |
ttcaatgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaatcatccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttg |
309 |
Q |
| |
|
||| ||| | ||| || |||| ||| ||||||| |||||||||||| |||||||||||||||||||||| ||| ||||| || |||||| |
|
|
| T |
2910644 |
ttctttgagttatctggagagcccctcgaacaaagtgaaacttacacagtcatccaaacatatcttggtgctaactcgagtgaaagagcca--------- |
2910554 |
T |
|
| Q |
310 |
aagccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtc |
409 |
Q |
| |
|
||||||| |||||||||||| | ||| || || || |||| |||||||||||||||||| ||||| || || |||||| || |||||||||| |
|
|
| T |
2910553 |
------aagttgtcgaagatagccaaactccggttatctttggcatagacgacaacgaagagatcaccgatgattttaaaggagtcgaaatttggtggtc |
2910460 |
T |
|
| Q |
410 |
tgcaaatagcaaagctccaagaagaaaagcatcttcaggaagatct--ttc-gatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgat |
506 |
Q |
| |
|
|||||| |||| | ||||| | ||| || |||||||||| || ||| |||||| |||||| | | |||||||| ||| ||||||||||| | ||| |
|
|
| T |
2910459 |
tgcaaacagcacaattccaacggcacaagaattttcaggaagacctaattcggatgtgataagatacctaaccctaaccttcgacaaaaggcatggtgat |
2910360 |
T |
|
| Q |
507 |
ctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgactaaagctttacaccaacaa |
595 |
Q |
| |
|
||||| ||| |||| ||||| ||||||||||| || |||||||| ||||| | ||||| |||| |||||||||||||| ||||| |
|
|
| T |
2910359 |
ctcatcactacctcgtacatccaacatgtgttagaacaaggaaaacctattgcacagaagaagaggcagctaaagctttacactaacaa |
2910271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 214 - 412
Target Start/End: Complemental strand, 2833929 - 2833731
Alignment:
| Q |
214 |
atgaatcatcgggcgagcgtctcaaacaaagcgaaacttacacaatcatccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttgaagc |
313 |
Q |
| |
|
|||||| ||| || || |||||||||||||| |||||||||| ||||||||||||||||||| ||| ||| | || |||| | | ||||| |||| |
|
|
| T |
2833929 |
atgaattatccggtgaacgtctcaaacaaagtgaaacttacaaaatcatccaaacatatcttagtgataactcatcccaaagagctagaagacttaaagc |
2833830 |
T |
|
| Q |
314 |
cgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgc |
412 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||| |||||||| || || ||||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2833829 |
tgaagttgtcaaagatagccaaaacccacttgtcctaagcatggatgataatgaagaaatcatagatgagttcaatggagtcaaagtttggtggactgc |
2833731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 48 - 573
Target Start/End: Original strand, 2841525 - 2842053
Alignment:
| Q |
48 |
atgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgccatgtatgagcaattctgcccatctgatcttcgta |
147 |
Q |
| |
|
||||||||| ||||||||| |||| | |||||||||| ||||||| | |||||||| ||||||||||||||| |||||| |||| | | ||||||| |
|
|
| T |
2841525 |
atgggaattagggaaatatggtcaaacctaggctcaataatggctagcataatgtttgtatatgccatgtatgagaaattcttcccaccagcacttcgta |
2841624 |
T |
|
| Q |
148 |
agtttgttgaaaactacaaacacaaatttgcagatcttatgtccccttacatccaaataactttcaatgaatcatcgggcgagcgtctcaaacaaagcga |
247 |
Q |
| |
|
| | || ||| |||| |||||||| | | | |||| |||||||||| ||||||| ||| |||| ||| || || ||||||||| | | | |
|
|
| T |
2841625 |
gatatcttcgaaaatacactcacaaattcaccaacttcatgtacccttacatcaaaataaccttctatgagaaatcaggagataatctcaaacacaacaa |
2841724 |
T |
|
| Q |
248 |
aacttacacaatcatccaaacatatcttggtgcgaacacgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtc |
347 |
Q |
| |
|
||| ||||||| |||||||||||||||| |||| ||| | || |||| | | ||||| |||| |||||| | ||||||||||| || ||||| |
|
|
| T |
2841725 |
aacatacacaaccatccaaacatatcttagtgctaactcttcacaaagagctagaagacttaaagctgaagttatcaaagatagccaaaatccacttgtt |
2841824 |
T |
|
| Q |
348 |
cttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcag |
447 |
Q |
| |
|
|| |||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||| || | |||||| | || ||| |||| |
|
|
| T |
2841825 |
ctaagcatggatgacaaccaagagatcacagatgagttcaatggtgtcaaagtttggtggtcagcaaatcacatcacctcaagaacacaatcattttcaa |
2841924 |
T |
|
| Q |
448 |
gaagatct--ttc-gatgtggtaagatgcttcaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggacca |
544 |
Q |
| |
|
| || ||| |||| | ||||| ||| |||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||| ||||| || |
|
|
| T |
2841925 |
tataccctagttcagatgagaaaagattcttaaccctaactttccataaaaggcatcgtgaactcatcactacctcttacatacaacatgttttggaaca |
2842024 |
T |
|
| Q |
545 |
aggaaaggctattatatttaagaataggc |
573 |
Q |
| |
|
|||||||||||| | | | |||||||||| |
|
|
| T |
2842025 |
aggaaaggctataacaatgaagaataggc |
2842053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 589
Target Start/End: Complemental strand, 2833673 - 2833551
Alignment:
| Q |
467 |
aagatgcttcaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaag |
566 |
Q |
| |
|
||||| ||| |||||||| ||||| |||| |||||| || |||| ||| |||||||||| |||||||||||||| ||||||| ||||||| ||| |
|
|
| T |
2833673 |
aagattcttaaccctaaccttccataaaaagcatcgtgaagtcatcactacctcttacattcaacatgtgttggatgaaggaaaatctattatgagcaag |
2833574 |
T |
|
| Q |
567 |
aataggcgactaaagctttacac |
589 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
2833573 |
aataggcaactaaagctttacac |
2833551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 595
Target Start/End: Original strand, 2828594 - 2828712
Alignment:
| Q |
477 |
accctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataggcgac |
576 |
Q |
| |
|
|||||||| |||||||||| |||| || || |||||| ||||| || ||||||||||| || |||||||||||||||| ||| ||||||||| | |
|
|
| T |
2828594 |
accctaaccttccacaaaaaatatcgtgagcttattactaggtcttatatccaacatgtgttagaacaaggaaaggctattacattgaagaataggaagc |
2828693 |
T |
|
| Q |
577 |
taaagctttacaccaacaa |
595 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
2828694 |
ttaagctttataccaacaa |
2828712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 14577701 - 14577778
Alignment:
| Q |
480 |
ctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctatt |
557 |
Q |
| |
|
||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
14577701 |
ctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
14577778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 2828448 - 2828544
Alignment:
| Q |
311 |
agccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagtcaaagtttggtgg |
407 |
Q |
| |
|
|||||||||||| ||| |||| ||| | || |||||||||| ||| || || || ||||||||| |||| | ||||||||||||||| |||||||| |
|
|
| T |
2828448 |
agccgaagttgtcgaaaatagtcaaactccacttgtccttaccattgatgataatgaagagatcatagataaattcaatggagtcaaaatttggtgg |
2828544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 14577537 - 14577649
Alignment:
| Q |
295 |
gagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagagatcgaagatgagttcaatggagt |
394 |
Q |
| |
|
|||||||| ||||| | || |||||||| ||| |||| ||| ||||||||||||| | ||||| ||||| || |||||| ||| | ||||||||||| |
|
|
| T |
14577537 |
gagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccgcttgtcctcaccatgggtgacaatgaggagatcattgataaattcaatggagt |
14577636 |
T |
|
| Q |
395 |
caaagtttggtgg |
407 |
Q |
| |
|
||||| |||||| |
|
|
| T |
14577637 |
aaaagtatggtgg |
14577649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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