View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12026_low_6 (Length: 437)
Name: NF12026_low_6
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_low_6 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 23401587 - 23401307
Alignment:
| Q |
1 |
tacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23401587 |
tacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaatgatacatttgtccttacatggcactgctatacatgaattgccttcatc |
23401488 |
T |
|
| Q |
101 |
gatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401487 |
gatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgctgggaataagttatccaatgatcatggactgagatct |
23401388 |
T |
|
| Q |
201 |
gttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401387 |
gttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
23401307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 23351364 - 23351091
Alignment:
| Q |
8 |
tggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttgg |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||| ||| || | | || ||||||||||||||||||||| | ||||| | |||||||||||| |
|
|
| T |
23351364 |
tggctgttcatctctcatcgaattttcagtgacatcggaggaaatgacaaagttaaccttacatggcactgctatacgtgaattgtcctcatcgatttgg |
23351265 |
T |
|
| Q |
108 |
cgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaag |
207 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| || || || || ||| |||||||||||||||||| |||||||| |||||| | ||||||| || |
|
|
| T |
23351264 |
cgtaatagaaaacttacttctcttggcctaactgagtgcaaaaatcttaactttgttgggaataagttatcaaatgatcagggactggggtctgttacag |
23351165 |
T |
|
| Q |
208 |
aactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23351164 |
aactagacctctctgggtgcacagaaatcaatgcactaagtctgtggtccatccttgatggcatacagtcttta |
23351091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 23462693 - 23462419
Alignment:
| Q |
7 |
atggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttg |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||| ||| ||| || | | || ||||||| || |||| |||||||| ||||| ||||||||||||| |
|
|
| T |
23462693 |
atggttgttcatctctcacagaattttcagtgacatcggaggaaatgacaaaattatccttacgtgacacttctatacatgaattgacttcatcgatttg |
23462594 |
T |
|
| Q |
107 |
gcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaa |
206 |
Q |
| |
|
|| ||||| |||||||||| ||||||| ||| ||| |||||||||||| | | |||||||||||||||| | |||||||||||||| | ||||||| | |
|
|
| T |
23462593 |
gcataataccaaacttactgttcttgacctagctggatgtaacaagcttactattgttgggaataagttaacagatgatcatggactggggtctgttaca |
23462494 |
T |
|
| Q |
207 |
gaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||| || ||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
23462493 |
gagctagacctttctgggtgcacagaaatcaatgcaataagtctgtcgtccatccttgatggcatacaatcttta |
23462419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 23468300 - 23468023
Alignment:
| Q |
4 |
ttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgat |
103 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || ||||||||| ||| || | | || |||||||||||||||||||||| | |||| ||| |||||| |
|
|
| T |
23468300 |
ttgatggttgttcatccctcatggaattttcggtgacatcagaggaaatgacagagttatccttacatggcactgctatacgtgaattatctttatcgat |
23468201 |
T |
|
| Q |
104 |
ttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgtt |
203 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||||| || | | |||| |
|
|
| T |
23468200 |
ttggcgtaattgcaaacttacttctcttggtctaactgagtgtaacaagctcaacactgttgggaagaagttatcagatgatcatgggcttgggtttgtt |
23468101 |
T |
|
| Q |
204 |
aaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
| |||||||||||||| | ||||||||||||| || |||||| |||||||||||||| ||||| ||| |||||||| |
|
|
| T |
23468100 |
accgaactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatcctcgatggtatatagtcttta |
23468023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 23477974 - 23477694
Alignment:
| Q |
1 |
tacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatc |
100 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||| ||||| || ||| || | | ||| ||||| |||||||||||||| | ||||| ||||||| |
|
|
| T |
23477974 |
tacttgatggttgttattctctcacagaattttcagtgacatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatc |
23477875 |
T |
|
| Q |
101 |
gatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatct |
200 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||| | | ||||||||||| |||| |||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
23477874 |
gatttggcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtct |
23477775 |
T |
|
| Q |
201 |
gttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
23477774 |
gttacagaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtccatccttgatggcatacaatcttta |
23477694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 23471808 - 23471529
Alignment:
| Q |
2 |
acttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcg |
101 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||| ||| || | | || |||||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
23471808 |
acttgatggttgttcatctctcatggaattttcagtgacatcggaggaaatgacagagttatccttatgtggcactgatatacatcaattgtcttcatca |
23471709 |
T |
|
| Q |
102 |
atttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctg |
201 |
Q |
| |
|
||||||||||||| |||| | ||| || || | ||||||| |||||||||||| |||| ||| |||||||||||||| ||||||||||||| | | || |
|
|
| T |
23471708 |
atttggcgtaataccaaaatgactgttattaacctaactggatgtaacaagcttaacattgtcgggaataagttatcagatgatcatggacttgggtttg |
23471609 |
T |
|
| Q |
202 |
ttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
||| |||||||||||||| | |||||||||||| ||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23471608 |
ttacggaactagacctttcagggtgcacagaaattaatgcattaagtttgtggtccatccttgatggcatacaatcttta |
23471529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 23498423 - 23498144
Alignment:
| Q |
1 |
tacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatc |
100 |
Q |
| |
|
|||| ||||| ||||| ||||||| ||||| ||||| ||||| || ||| || | | ||| ||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
23498423 |
tactcgatggttgttcttctctcacagaattctcagtgacatcggatgaaatgacagagttgaccttagatggcactgctatacgtgaattgtcttcatc |
23498324 |
T |
|
| Q |
101 |
gatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatct |
200 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||||| || ||||||||||| |||| |||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
23498323 |
gatttggcgtaacagaaaacttacttctctttccctaaccgagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtct |
23498224 |
T |
|
| Q |
201 |
gttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttt |
280 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
23498223 |
gttatagaactaaacctttcacggtgcacagaaatcaatgcattaagtctgtggtccatccttgatggcatacaatcttt |
23498144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 23382930 - 23382656
Alignment:
| Q |
7 |
atggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttg |
106 |
Q |
| |
|
|||| ||||||||||||| |||||||| || ||||| || ||| || | | || | |||| ||||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
23382930 |
atggttgttcatctctcacagaattttcggtgacatcggaagaaatgacagagttattcttagatggcactgctatacgtgaattgtcttcatcgttttg |
23382831 |
T |
|
| Q |
107 |
gcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaa |
206 |
Q |
| |
|
| |||||| |||||||||| ||||||| |||| || |||||||||||| |||| ||||||||| |||||||| ||||||||||||| || |||| | |
|
|
| T |
23382830 |
gtgtaataccaaacttactgttcttgacctaattggatgtaacaagcttaacattgttgggaaaaagttatcagatgatcatggacttttgtcggttaca |
23382731 |
T |
|
| Q |
207 |
gaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
23382730 |
gaactagacctttcagggtgcacagaaatcaatgcattaagtctgtggtccatccttgatggtatacagtcttta |
23382656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 23404074 - 23403800
Alignment:
| Q |
7 |
atggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttg |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||||| | ||||| ||| ||| || | | || |||||| || |||| |||||||| ||||| ||||||||||||| |
|
|
| T |
23404074 |
atggttgttcatctctcacagaattttcaatgacatcggaggaaatgacaaaattatccttatgtgacacttctatacatgaattgacttcatcgatttg |
23403975 |
T |
|
| Q |
107 |
gcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaa |
206 |
Q |
| |
|
|| ||||| |||||||||| ||||||| ||| ||| |||||||||||| | | |||||||||||||||| | |||||||||||||| | ||||||| | |
|
|
| T |
23403974 |
gcataataccaaacttactgttcttgacctagctggatgtaacaagcttactattgttgggaataagttaacagatgatcatggactggggtctgttaca |
23403875 |
T |
|
| Q |
207 |
gaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|| ||||||||||| | |||||||||||||||| ||| || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
23403874 |
gagctagacctttcagggtgcacagaaatcaatgcatcaagtctgtggtccatacttgatggtatacagtcttta |
23403800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 23446674 - 23446394
Alignment:
| Q |
1 |
tacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatc |
100 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||||| || |||||||| ||| || | | ||| ||||| |||||||||||||| | ||||| ||||||| |
|
|
| T |
23446674 |
tactcgatggttgtgcatctctcacagaattttcggtgacatcagatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatc |
23446575 |
T |
|
| Q |
101 |
gatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatct |
200 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||| | || ||||||||||| |||| |||||||||||||||| | |||||||||||||| | ||| |
|
|
| T |
23446574 |
gatttggcgtaacagaaaacttacttcgcttggcctatccgagtgtaacaagcttaacattgttgggaataagttaacaaatgatcatggacttgggtct |
23446475 |
T |
|
| Q |
201 |
gttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
|||| || |||||||||| | |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23446474 |
gttaccgagctagaccttttagggtgcacagaaatcaatgcattaagtctgtggtctatccttgatggcatacagtcttta |
23446394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 279 - 419
Target Start/End: Complemental strand, 23399190 - 23399050
Alignment:
| Q |
279 |
ttagatttggaaatgaacataaattttaggaaacgaacactgaaataataannnnnnnaaaaataaacaggcccaattattttgagaaatgaaccatcga |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23399190 |
ttagatttggaaatgaacataaattttaggaaacgaacaatgaaaaaataatttttttaaaaataaacaggcccaattattctgagaaatgaaccatcga |
23399091 |
T |
|
| Q |
379 |
tggcatcagatgcttgtaccctgccctgcatacactattca |
419 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23399090 |
agtcatcatatgcttgtaccctgccctgcatacactattca |
23399050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 23453379 - 23453170
Alignment:
| Q |
72 |
ggcactgctatacataaattgccttcatcgatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaata |
171 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||| |||||||||||||||| |||| ||| |||| ||||||||||| || | ||||||||||| |
|
|
| T |
23453379 |
ggcactgctatacgtgaattgtcttcatcgatttggcgcaatagcaaacttacttggcttggcctatctgagtgtaacaagcttaaaattgttgggaata |
23453280 |
T |
|
| Q |
172 |
agttatccaatgatcatggactgagatctgttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcat |
271 |
Q |
| |
|
||||| |||||||||||||| | ||||||| | | ||||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
23453279 |
agttaagagatgatcatggactgtggtctgttacaaagctagacctttcagggtgcacagaaatcaatgcattaagtctttggtccatccttgatggcat |
23453180 |
T |
|
| Q |
272 |
acagtcttta |
281 |
Q |
| |
|
||| |||||| |
|
|
| T |
23453179 |
acaatcttta |
23453170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 65 - 273
Target Start/End: Complemental strand, 23439209 - 23439001
Alignment:
| Q |
65 |
cttacatggcactgctatacataaattgccttcatcgatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgtt |
164 |
Q |
| |
|
||||| |||||||||||||| | | ||| ||||||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||| |||| |||| |
|
|
| T |
23439209 |
cttacgtggcactgctatacgtgagttgtcttcatcgatttggcgtaataccaaacttacttctctttccataactaagtgtaacaagcttaacattgtt |
23439110 |
T |
|
| Q |
165 |
gggaataagttatccaatgatcatggactgagatctgttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttg |
264 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||| | | ||||||||||| | |||||||||||||||| |||||| || |||||||| |||| |
|
|
| T |
23439109 |
gggaataagttatcagatgatcatggactggggtctgttacacagctagacctttcagggtgcacagaaatcaatgcattaagtctatggtccatacttg |
23439010 |
T |
|
| Q |
265 |
atggcatac |
273 |
Q |
| |
|
|||| |||| |
|
|
| T |
23439009 |
atggtatac |
23439001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 23427581 - 23427457
Alignment:
| Q |
279 |
ttagatttggaaatgaacataaattttaggaaacgaacactgaaataa-taannnnnnnaaaaataaacaggcccaattattttgagaaatgaaccatcg |
377 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
23427581 |
ttagattaggaaatgaacataaattttagaaaacgaacactaaaaaaaataattttttttaaaataaacaggccaacttattttgagaaatgaactatcc |
23427482 |
T |
|
| Q |
378 |
atggcatcagatgcttgtaccctgc |
402 |
Q |
| |
|
| | ||||| || |||||||||||| |
|
|
| T |
23427481 |
aagtcatcatatacttgtaccctgc |
23427457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 10838 - 10564
Alignment:
| Q |
7 |
atggctgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttg |
106 |
Q |
| |
|
|||| ||||||||||||| |||||||| || ||||| || ||| || | | || | |||| ||||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
10838 |
atggttgttcatctctcacagaattttcggtgacatcggaagaaatgacagagttattcttagatggcactgctatacgtgaattgtcttcatcgttttg |
10739 |
T |
|
| Q |
107 |
gcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaa |
206 |
Q |
| |
|
| |||||| |||||||||| ||||||| |||| || |||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||| |||| | |
|
|
| T |
10738 |
gtgtaataccaaacttactgttcttgacctaattggatgtaacaagcttaacattgttgggaaaaagttatcagatgatcatggatttttatcggttaca |
10639 |
T |
|
| Q |
207 |
gaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
10638 |
caactagacctttcagggtgtacagaaatcaatgcattaagtctgtggtccatccttgatggcatacattcttta |
10564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 12897626 - 12897898
Alignment:
| Q |
12 |
tgttcatctctcattgaattttcagtaacatcagagaaaacgatacatttgtccttacatggcactgctatacataaattgccttcatcgatttggcgta |
111 |
Q |
| |
|
||||||||||||| || ||||| || ||||||||| ||| ||| ||||| ||| ||||||||||||||| || | || ||||| |||||||| | |
|
|
| T |
12897626 |
tgttcatctctcaaggagttttcggtgacatcagaggaaatgatgtcgttgtcgttatgtggcactgctatacacgaacttccctcatcaatttggcgca |
12897725 |
T |
|
| Q |
112 |
atagcaaacttacttttc---ttgatctaactgaatgtaacaagctgaacaatgttgggaataagttatccaatgatcatggactgagatctgttaaaga |
208 |
Q |
| |
|
|| | ||||| |||| || ||||||||| ||||||||| ||||| |||| ||||||||| |||||| | ||||||| ||| || || ||| || |
|
|
| T |
12897726 |
attggaaactcacttatcgtcttgatctaagtgaatgtaagaagcttaacattgttgggaagaagttaacaaatgatccaggattggagtcacttacagt |
12897825 |
T |
|
| Q |
209 |
actagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtcttta |
281 |
Q |
| |
|
| |||||||| | |||||| |||||||||||| || ||||||| ||||||||| |||||||| |||||| |
|
|
| T |
12897826 |
tttggacctttcgggatgcacacaaatcaatacatcgaacctgtggttcatccttgacggcatacaatcttta |
12897898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University