View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12026_low_8 (Length: 360)
Name: NF12026_low_8
Description: NF12026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12026_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 18045469 - 18045640
Alignment:
| Q |
1 |
gaaagtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcagggggaagttcaggg |
100 |
Q |
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| T |
18045469 |
gaaagtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacggcataagttgcaaattcagggggaagtttaggg |
18045568 |
T |
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| Q |
101 |
ttaacatttgcagctatgaacccttcagaagctccatagatagaagttactagaggcagttcccctgcataa |
172 |
Q |
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| T |
18045569 |
ttaacatttgcagctatgaacccttcagaagctccgtagatagaagtcactagaggcagttcccctgcataa |
18045640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 13979615 - 13979875
Alignment:
| Q |
4 |
agtaccatcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcagggggaagttcagggtta |
103 |
Q |
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| T |
13979615 |
agtaccctcattcttaacctgtgtgagaggaatgaactcaaagtatccattttgaggaaacaaaacataggttgccaattcaaggggaagtttagggtta |
13979714 |
T |
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| Q |
104 |
acatttgcagctatgaacccttcagaagctccatagatagaagttactagaggcagttcccctgcataatgcctgaattttcctatatactgctccattg |
203 |
Q |
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| T |
13979715 |
atatttgcagctatgaacccttcagaagctccatagatagaagtcactaaaggtaactctcctgcatagtgcctcaactttcctaaatatggctccatcg |
13979814 |
T |
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| Q |
204 |
acccgctcatgattccgaaaatgtatttagcattaggaaacaactctggtatcaaaccata |
264 |
Q |
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| T |
13979815 |
accccgtcatgattccataaatgtacttcgcattaggaaacaactctggtaacaaaccata |
13979875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 13979903 - 13979945
Alignment:
| Q |
299 |
gtggattatgttagctaattctcggtttggtttgagcaattta |
341 |
Q |
| |
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| T |
13979903 |
gtggattatgtcagctaattctggatttggtttgagcaattta |
13979945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 48367981 - 48367861
Alignment:
| Q |
19 |
aagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacgacataagttgccaattcagggggaagttcagggttaacatttgcagctatg |
118 |
Q |
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|||||| ||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||| |||| || ||||||||||||||||| || |
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| T |
48367981 |
aagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcgtaagttgccaattcaggtggaatttttgggttaacatttgcagcaatc |
48367882 |
T |
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| Q |
119 |
aacccttcagaagctccatag |
139 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48367881 |
cacccttcagaagctccatag |
48367861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 48367708 - 48367666
Alignment:
| Q |
299 |
gtggattatgttagctaattctcggtttggtttgagcaattta |
341 |
Q |
| |
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|||||||||||| ||||||||| | |||||||||||||||||| |
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| T |
48367708 |
gtggattatgttcgctaattctggatttggtttgagcaattta |
48367666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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