View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12027_high_5 (Length: 410)

Name: NF12027_high_5
Description: NF12027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12027_high_5
NF12027_high_5
[»] chr3 (21 HSPs)
chr3 (7-410)||(23477312-23477724)
chr3 (8-410)||(23497744-23498173)
chr3 (146-410)||(23446160-23446424)
chr3 (166-410)||(23350877-23351121)
chr3 (166-410)||(23401093-23401337)
chr3 (8-126)||(23446007-23446125)
chr3 (169-410)||(23471318-23471559)
chr3 (152-409)||(23452942-23453199)
chr3 (246-407)||(23462285-23462446)
chr3 (246-410)||(23382522-23382686)
chr3 (9-116)||(23434136-23434243)
chr3 (256-409)||(23438869-23439022)
chr3 (246-410)||(23467888-23468053)
chr3 (173-410)||(23403593-23403830)
chr3 (19-126)||(23350721-23350828)
chr3 (19-128)||(23462043-23462152)
chr3 (19-128)||(23382280-23382389)
chr3 (46-103)||(23467740-23467797)
chr3 (46-97)||(23401012-23401063)
chr3 (46-128)||(23438644-23438726)
chr3 (166-228)||(23467821-23467883)
[»] scaffold0201 (2 HSPs)
scaffold0201 (203-410)||(10387-10594)
scaffold0201 (7-123)||(10203-10319)
[»] chr4 (1 HSPs)
chr4 (47-111)||(12898179-12898243)
[»] chr2 (1 HSPs)
chr2 (194-239)||(16120553-16120598)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 23477312 - 23477724
Alignment:
Q  7 cagaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23477312 cagaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaagg 23477411  T
Q  107 aacttgtgctcctggcaagaaaaggttattgacatcttta---------aaagggtctttagagtatatttgtaccatgttctcaagaaatgaccgttga 197  Q
    |||||||||||||||| ||||||||| |||| ||||||||         ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23477412 aacttgtgctcctggccagaaaaggtaattggcatctttatttacatgaaaagggtctttagagaaaatttgtaccatgttctcaagaaatgaccgttga 23477511  T
Q  198 gtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaat 297  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23477512 gtggagtctgtatccagataagtgcaattaatgccactcaaagttattagggatgacggaagttctgttagagacacaagtttcctgcaaccatctaaat 23477611  T
Q  298 caagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23477612 caagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatc 23477711  T
Q  398 aaggatggaccac 410  Q
    |||||||||||||    
T  23477712 aaggatggaccac 23477724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 23497744 - 23498173
Alignment:
Q  8 agaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaagga 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23497744 agaaagaatggtgcagaatacgaaaccagacaggttatattttggaatcggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcgagga 23497843  T
Q  108 acttgtgctcctggcaagaa------------------aaggttattgacatcttta---------aaagggtctttagagtatatttgtaccatgttct 180  Q
    ||||||||||||||||||||                  | |||||||||||||||||         ||||||||||||||| | |||||||| |||||||    
T  23497844 acttgtgctcctggcaagaaatagacatcataataggaacggttattgacatctttatttgcatgaaaagggtctttagagaagatttgtactatgttct 23497943  T
Q  181 caagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgttagagacacaagttt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||| ||||||||||||||||||||    
T  23497944 caagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatggcactcaaacataatagggatggcggaagctctgttagagacacaagttt 23498043  T
Q  281 cctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgttagccctttt 380  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||| ||||  |||| |||     
T  23498044 cctgcaatcatctaaaactagccattttagcattgaatggtttcgtatgttctcagggacacattccaagttgcaacaatcttgcaatgagagccgtttc 23498143  T
Q  381 aaagattgtatgccatcaaggatggaccac 410  Q
    ||||||||||||||||||||||||||||||    
T  23498144 aaagattgtatgccatcaaggatggaccac 23498173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 146 - 410
Target Start/End: Original strand, 23446160 - 23446424
Alignment:
Q  146 aaaagggtctttagagtatatttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttatt 245  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |    
T  23446160 aaaagggtatttagagaagatttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatggcactcaaagataat 23446259  T
Q  246 agggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacatt 345  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||| | || | ||||||||||||||||||| | || ||||| ||||||||||    
T  23446260 agggatggcggaagctctgttacagacacaagtttcctgcaatcatctaaagctagactttttagcattgaatggttttgtatgttctcggggagacatt 23446359  T
Q  346 ccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    ||| |||||||||||| || ||||  |||| ||||||||| ||||||||||||||||| ||||||    
T  23446360 ccatgttgcaacactcatgcaatgagagccattttaaagactgtatgccatcaaggatagaccac 23446424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 166 - 410
Target Start/End: Original strand, 23350877 - 23351121
Alignment:
Q  166 tttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgt 265  Q
    ||||||||||||||||||| ||| |||||||||||||||  |||||||||||| |||| |||| | |  |||||  ||  |||||||| ||||| ||||     
T  23350877 tttgtaccatgttctcaagcaataaccgttgagtggagttcgtgtccagataattgcagttaacggctttcaaatataacagggatggtggaagctctgc 23350976  T
Q  266 tagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgt 365  Q
    ||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      
T  23350977 tagggacactagtttcctgcaatcatctaaatcaagccgttttagcattgaatggtttcggatattctcagggagacattctaagttgcaacactctttc 23351076  T
Q  366 aatgttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    ||| |||| | ||||||||| ||||||||||||||||||||||||    
T  23351077 aattttagtcgttttaaagactgtatgccatcaaggatggaccac 23351121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 166 - 410
Target Start/End: Original strand, 23401093 - 23401337
Alignment:
Q  166 tttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgt 265  Q
    |||||| |||||| | || ||||||| ||||| |||||| |||||||| |||||||||||||| | | ||||||  ||  |||||||| ||||| |||||    
T  23401093 tttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccatataagtgcaattaacggctctcaaatataacagggatggtggaagctctgt 23401192  T
Q  266 tagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgt 365  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||| || |||||||||  ||  ||||||||||||||||      
T  23401193 tagagacacaagtttcctgcaatcatctaaatcaagtcattctagcattgaatggttttggatgttgtcagggagaacttataagttgcaacactctttc 23401292  T
Q  366 aatgttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    ||| |||| ||||||||||| ||||||||||||||||||||||||    
T  23401293 aattttagtccttttaaagactgtatgccatcaaggatggaccac 23401337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 23446007 - 23446125
Alignment:
Q  8 agaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaagga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23446007 agaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaacttgcgagga 23446106  T
Q  108 acttgtgctcctggcaaga 126  Q
    |||||||||||||||||||    
T  23446107 acttgtgctcctggcaaga 23446125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 169 - 410
Target Start/End: Original strand, 23471318 - 23471559
Alignment:
Q  169 gtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgttag 268  Q
    |||||||||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||||   |  | |||  ||  |||||||||||||| ||| | ||    
T  23471318 gtaccatgttttcaagcaatgaccattgtgtggaatctgtgtccagataagtgcaattaacagctttaaaatataacagggatggcggaagctctatcag 23471417  T
Q  269 agacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaat 368  Q
    || ||| || ||||||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||  |||    
T  23471418 agtcacgaggttcctgcaatcatctaattcaagccattctagcattgaatggttttggatattctctgggagactttctaagttgcaacactctttcaat 23471517  T
Q  369 gttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
     |||||  ||||||||||||||||||||||||||||||||||    
T  23471518 tttagctgttttaaagattgtatgccatcaaggatggaccac 23471559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 152 - 409
Target Start/End: Original strand, 23452942 - 23453199
Alignment:
Q  152 gtctttagagtatatttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggat 251  Q
    |||||||||| |  || |||||||||||||||| ||| |||||||||||||||   | ||||||||| |||| ||||   |  |||||  ||  ||||||    
T  23452942 gtctttagagaaagttcgtaccatgttctcaagcaataaccgttgagtggagttcatatccagataattgcagttaacagctgtcaaatataacagggat 23453041  T
Q  252 ggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagt 351  Q
    |  ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||| ||||    
T  23453042 gctggaagctctgctagagacacaagtttcctgcaatcatctaaatcaagccattttaggattgaatggttttggatattctcggggagactttctaagt 23453141  T
Q  352 tgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggacca 409  Q
    |||| ||||| |  ||| |||||  |||||||||||||||||||||||||||||||||    
T  23453142 tgcagcactcattcaatattagctgttttaaagattgtatgccatcaaggatggacca 23453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 246 - 407
Target Start/End: Original strand, 23462285 - 23462446
Alignment:
Q  246 agggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacatt 345  Q
    |||||||||||||  |||||||||||||||||||||||||||   ||||| |||||||||| |||||||||||||||| | || |||| |||||||||||    
T  23462285 agggatggcggaatctctgttagagacacaagtttcctgcaattgtctaattcaagccattctagcattgaatggttttgtatgttcttagggagacatt 23462384  T
Q  346 ccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggac 407  Q
    | |||||||||||||| |  ||| |||||| |||||||||||||||||||||||||||||||    
T  23462385 ctaagttgcaacactcattcaattttagccgttttaaagattgtatgccatcaaggatggac 23462446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 23382522 - 23382686
Alignment:
Q  246 agggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacatt 345  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||| || ||||| ||||||||||    
T  23382522 agggatggcggaagctctgtcagagacacaagtttcctgcaatcatccaattcaagccattctagcattgaatggtttcgcatgttctctgggagacatt 23382621  T
Q  346 ccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    | ||||||  |||||| |  ||| |||||| ||||||||| ||||| ||||||||||||||||||    
T  23382622 ctaagttgacacactcattcaattttagccgttttaaagactgtataccatcaaggatggaccac 23382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 23434136 - 23434243
Alignment:
Q  9 gaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaa 108  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  23434136 gaaacaatggtgcagaatatgaaaccagacaggttagattttggaataggaggaatggttattgaagcctttgttgtttgaaaatcaaacttgcgaggaa 23434235  T
Q  109 cttgtgct 116  Q
     |||||||    
T  23434236 tttgtgct 23434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 256 - 409
Target Start/End: Original strand, 23438869 - 23439022
Alignment:
Q  256 gaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgca 355  Q
    |||| ||||| ||||||||||||||||||||| | ||||| |||||||||| |||||||  ||||||| | || ||||||||||||||||| ||||||||    
T  23438869 gaagctctgtcagagacacaagtttcctgcaatcgtctaattcaagccattctagcattatatggttttgtatgttctcagggagacattctaagttgca 23438968  T
Q  356 acactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggacca 409  Q
    |||||| |  ||| |||||| |||||||||| |||| |||||||| ||||||||    
T  23438969 acactcattcaattttagccgttttaaagatcgtataccatcaagtatggacca 23439022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 23467888 - 23468053
Alignment:
Q  246 agggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagccatt-ttagcattgaatggtttcggatattctcagggagacat 344  Q
    |||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||   | ||||||||||||| ||||||| || ||||||       
T  23467888 agggatggtggaagctctgttagagacacaattttcctgcaatcatctaaatcaagccattcccaacattgaatggttttggatattgtcggggagaaca 23467987  T
Q  345 tccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    || ||||||||||||||||  ||| |||||| ||||||||| | ||| ||||| ||||||||||||    
T  23467988 tctaagttgcaacactctttcaattttagccgttttaaagactatataccatcgaggatggaccac 23468053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 173 - 410
Target Start/End: Original strand, 23403593 - 23403830
Alignment:
Q  173 catgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgttagagac 272  Q
    |||||| ||||  |||||||| || || | || ||||||||||||||||||||||| | |  | |||  ||  | |||||||||||| ||||| ||||||    
T  23403593 catgttgtcaaagaatgaccgctgtgtagtgtatgtgtccagataagtgcaattaacggctttaaaatctaacaaggatggcggaagctctgtcagagac 23403692  T
Q  273 acaagtttcctgcaaccatctaaatcaagccattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgtta 372  Q
    ||||||||||||||| |||| || ||||||||||  |||| |||||| ||||  || ||||| |||||||| || ||||||  |||||| |  ||| |||    
T  23403693 acaagtttcctgcaatcatccaattcaagccattcaagcaatgaatgctttcccatgttctctgggagacactctaagttgacacactcattcaatttta 23403792  T
Q  373 gcccttttaaagattgtatgccatcaaggatggaccac 410  Q
    ||| ||||||||| ||||| |||||||| |||||||||    
T  23403793 gccgttttaaagactgtataccatcaagtatggaccac 23403830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 23350721 - 23350828
Alignment:
Q  19 tgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaacttgtgctcc 118  Q
    ||||||||||||||||| ||| || | |||||||||| ||||||||  ||||||||||||  | ||| | ||||||||| ||||| ||||||||||| ||    
T  23350721 tgcagaatatgaaaccacacaagtaagattttggaattggaggaatacttattgaagcctctactgtcttaaaatcaaagttgcatggaacttgtgcacc 23350820  T
Q  119 tggcaaga 126  Q
    ||||||||    
T  23350821 tggcaaga 23350828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 23462043 - 23462152
Alignment:
Q  19 tgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaacttgtgctcc 118  Q
    |||| |||||||||||| ||| || | |||| | ||||||| |||| |||||||||||||| ||||| ||||||||||| ||  | |||| |||||||||    
T  23462043 tgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatagttattgaagccttgattgtctgaaaatcaaaatttaatggaatttgtgctcc 23462142  T
Q  119 tggcaagaaa 128  Q
    ||||| ||||    
T  23462143 tggcatgaaa 23462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 23382280 - 23382389
Alignment:
Q  19 tgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaacttgtgctcc 118  Q
    |||| |||||||||||| ||| || | |||| | ||||||| ||||  ||||||||||||| ||||| ||||||||||| ||  | |||| |||||| ||    
T  23382280 tgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatacttattgaagccttgattgtctgaaaatcaaaatttaatggaatttgtgcacc 23382379  T
Q  119 tggcaagaaa 128  Q
    ||||| ||||    
T  23382380 tggcaggaaa 23382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 23467740 - 23467797
Alignment:
Q  46 attttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgca 103  Q
    |||||||||||||||||||  ||||||||||||  ||||| |||||||||||| ||||    
T  23467740 attttggaataggaggaataattattgaagcctctattgtctgaaaatcaaacatgca 23467797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 23401012 - 23401063
Alignment:
Q  46 attttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaa 97  Q
    |||||||||||||||||||  ||||||||||||  ||||| |||||||||||    
T  23401012 attttggaataggaggaataattattgaagcctctattgtctgaaaatcaaa 23401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 23438644 - 23438726
Alignment:
Q  46 attttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaacttgtgctcctggcaagaaa 128  Q
    |||||||||||||| |||| |||||||||||||   |||| ||||||||||| |   | |||||||||||||| |||| ||||    
T  23438644 attttggaataggaagaatagttattgaagcctcagttgtctgaaaatcaaaatataatggaacttgtgctccgggcaggaaa 23438726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 23467821 - 23467883
Alignment:
Q  166 tttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaa 228  Q
    |||||| |||||| | || ||||||| ||||| |||||| ||||||||||||| |||||||||    
T  23467821 tttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataactgcaattaa 23467883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 410
Target Start/End: Original strand, 10387 - 10594
Alignment:
Q  203 gtctgtgtccagataagtgcaattaatgccactcaaagttattagggatggcggaagttctgttagagacacaagtttcctgcaaccatctaaatcaagc 302  Q
    |||||||||||||||||||||||| | | |  | |||  ||  |||||||||||||  ||||||| ||||||||||||||||||| ||||||| ||||||    
T  10387 gtctgtgtccagataagtgcaattgacggcttttaaatataacagggatggcggaatgtctgttacagacacaagtttcctgcaatcatctaattcaagc 10486  T
Q  303 cattttagcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaagga 402  Q
    ||||  ||||||||||||||| | || ||| ||||||||||||| ||||||||||||   |  |||||||||| ||||||||| ||||||||||||||||    
T  10487 cattcaagcattgaatggttttgtatgttcacagggagacattctaagttgcaacacctattcaatgttagccgttttaaagaatgtatgccatcaagga 10586  T
Q  403 tggaccac 410  Q
    ||||||||    
T  10587 tggaccac 10594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 10203 - 10319
Alignment:
Q  7 cagaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaagg 106  Q
    ||||||||||| |||| |||||||||||| ||| || | |||||| ||||||| |||| | ||||||||||   ||||| ||||||||||| |   | ||    
T  10203 cagaaagaatgatgcaaaatatgaaaccacacaagtcagattttgtaataggaagaatagatattgaagccccgattgtctgaaaatcaaaatataatgg 10302  T
Q  107 aacttgtgctcctggca 123  Q
    |||||||||||||||||    
T  10303 aacttgtgctcctggca 10319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 12898243 - 12898179
Alignment:
Q  47 ttttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaactt 111  Q
    ||||||||||||||||||   |||||| ||||  ||||||||||||||||||| ||| |||||||    
T  12898243 ttttggaataggaggaataactattgacgcctctattgtttgaaaatcaaactcgcatggaactt 12898179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 16120553 - 16120598
Alignment:
Q  194 ttgagtggagtctgtgtccagataagtgcaattaatgccactcaaa 239  Q
    |||| |||||| |||||||||||||||||| |||||| ||||||||    
T  16120553 ttgaatggagtttgtgtccagataagtgcagttaatggcactcaaa 16120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University