View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12027_low_10 (Length: 241)
Name: NF12027_low_10
Description: NF12027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12027_low_10 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 289999 - 289776
Alignment:
| Q |
18 |
acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
289999 |
acttcggtcatgtaccataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgt |
289900 |
T |
|
| Q |
118 |
cttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
289899 |
cttgcattggttcggatgcccattcccacttgagtgtgtttcctaatgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttgg |
289800 |
T |
|
| Q |
218 |
attagacatatttttcaaacatgc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
289799 |
attagacatatttttcaaacatgc |
289776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 279554 - 279432
Alignment:
| Q |
18 |
acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgt |
117 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||| | |||||| |||||||||||||||||| ||||||||||||||||||| | ||| | || |||| |
|
|
| T |
279554 |
acttcggtcatgtaccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgt |
279455 |
T |
|
| Q |
118 |
cttgcattggttcggatgcccat |
140 |
Q |
| |
|
||| |||||| ||||||| |||| |
|
|
| T |
279454 |
cttccattgggtcggatgtccat |
279432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 278179 - 278108
Alignment:
| Q |
160 |
ctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatttt |
231 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||| |||||||| | | |||| ||| |||||||||||||| |
|
|
| T |
278179 |
ctgatgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacatagcattagacatatttt |
278108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 24525053 - 24524830
Alignment:
| Q |
18 |
acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
24525053 |
acttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgt |
24524954 |
T |
|
| Q |
118 |
cttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctagg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
24524953 |
cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg |
24524854 |
T |
|
| Q |
218 |
attagacatatttttcaaacatgc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24524853 |
attagacatatttttcaaacatgc |
24524830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 24531726 - 24531503
Alignment:
| Q |
18 |
acttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
24531726 |
acttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgt |
24531627 |
T |
|
| Q |
118 |
cttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctagg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
24531626 |
cttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctagg |
24531527 |
T |
|
| Q |
218 |
attagacatatttttcaaacatgc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24531526 |
attagacatatttttcaaacatgc |
24531503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University