View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12027_low_11 (Length: 228)
Name: NF12027_low_11
Description: NF12027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12027_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 39472996 - 39473203
Alignment:
| Q |
7 |
agcagagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagta |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39472996 |
agcagagattggaagggttgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagta |
39473095 |
T |
|
| Q |
107 |
ctcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39473096 |
ctcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggag |
39473195 |
T |
|
| Q |
207 |
tcgaaatt |
214 |
Q |
| |
|
| |||||| |
|
|
| T |
39473196 |
ttgaaatt |
39473203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 39487437 - 39487639
Alignment:
| Q |
13 |
gattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgag |
112 |
Q |
| |
|
|||||||||||| |||||||||||| ||| | |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
39487437 |
gattggaagggtaattggatgggcccaacaggcccaaatactagctcatccagccactggaggatttgtttcgcattgtggttggaattcaacactcgag |
39487536 |
T |
|
| Q |
113 |
agcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaa |
212 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
39487537 |
agcatatattttggtgtgcctattgccgcgtggccactctatgctgagcaacaggctaatgcttttgaattggtgtgtgaactgaaaataggtgtggaaa |
39487636 |
T |
|
| Q |
213 |
ttg |
215 |
Q |
| |
|
||| |
|
|
| T |
39487637 |
ttg |
39487639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 39476482 - 39476675
Alignment:
| Q |
11 |
gagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcg |
110 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
39476482 |
gagattggaaggatagttggatgggcccaacaggcccaaatactagcccacccagccataggaggatttgtttcacattgtggttggaattcaacactcg |
39476581 |
T |
|
| Q |
111 |
agagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaatagg |
204 |
Q |
| |
|
||||||| ||||||||||| || || |||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
39476582 |
agagcatatattttggtgtaccaattgccgcatggccactctttgctgaacaacaggctaatgcttttgaattggtgtgtgagctgaagatagg |
39476675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 39484233 - 39484415
Alignment:
| Q |
11 |
gagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcg |
110 |
Q |
| |
|
|||||||||||| | || ||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||| |
|
|
| T |
39484233 |
gagattggaaggataattagatgggcccaacaagcccaaatactagcccacccagccataggaggatttgtttcacattatggttggaattcaacactcg |
39484332 |
T |
|
| Q |
111 |
agagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgag |
193 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| | || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39484333 |
agagcatatattttggtgtgcctattgccgcatggccactctttgttgaacaacaggctaatgcttttgaattggtgtgtgag |
39484415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 39451969 - 39452157
Alignment:
| Q |
10 |
agagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactc |
109 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||||||||||| || |||||||| |||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
39451969 |
agagattggaagggtgattggttgggccccacaagcccaaatactagcacatccagccataggaggatttgtttcacattgtggctggaattccacactc |
39452068 |
T |
|
| Q |
110 |
gagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaa |
198 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||| || | ||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39452069 |
gagagcatatattttggtgtgcccattgcaacatggccgctctttgctgagcaacaggttaatgcttttgaattggtgtgtgagttgaa |
39452157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 39455595 - 39455785
Alignment:
| Q |
8 |
gcagagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtac |
107 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||| ||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| || |
|
|
| T |
39455595 |
gcagagattggaagggtgattggttgggctccacaaacccaaatactagcccatccagccacaggaggatttgtttcacattgtggttggaattccacac |
39455694 |
T |
|
| Q |
108 |
tcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaa |
198 |
Q |
| |
|
||||| |||| || ||||||||||| || || ||||||| || | ||| ||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
39455695 |
tcgagggcatatactttggtgtgcccattgcaacatggccgctctttgctgaacaacaggttactgcttttgaattggtgtgtgagctgaa |
39455785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 39461219 - 39461399
Alignment:
| Q |
7 |
agcagagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagta |
106 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || || |||||| | ||||||||||||| |||||||| | ||| |||||||| ||||||||| || |
|
|
| T |
39461219 |
agcagggattggaagggtcattggatgggctccgcagactcaaatattggcccacccagccacgggaggattcgtttcccattgtggctggaattcaata |
39461318 |
T |
|
| Q |
107 |
ctcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtg |
187 |
Q |
| |
|
||||||||||| |||||||||||||| || ||| | ||||| || | ||| ||||||||||||||||||||| | |||||| |
|
|
| T |
39461319 |
ctcgagagcatgtattttggtgtgcccattgccacgtggccgctctttgctgaacaacagactaatgcttttcagttggtg |
39461399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 39457502 - 39457311
Alignment:
| Q |
7 |
agcagagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagta |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||| ||| |||||||| |||||||| | |
|
|
| T |
39457502 |
agcagagattggaagggttattggatgggccccacagacgcacatactagcccacccagccacgggaggatttgtttctcattgtggctggaattccaca |
39457403 |
T |
|
| Q |
107 |
ctcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaa |
198 |
Q |
| |
|
||||||| ||| ||||||||||||||| | ||| | ||||| || | ||| || || ||||| ||||| ||| ||||||| |||||| |||| |
|
|
| T |
39457402 |
ctcgagaacatatattttggtgtgcctgttgccacgtggccgctctttgctgatcagcagacaaatgcatttcaattggtatgtgagctgaa |
39457311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 39463761 - 39463576
Alignment:
| Q |
10 |
agagattggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactc |
109 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| | |||||||||||||||||| |||| |||||||||| || |||||||| |||||||| ||| |
|
|
| T |
39463761 |
agagattggaagggtgattggttgggctccacaggcccaaatactagcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactg |
39463662 |
T |
|
| Q |
110 |
gagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagtt |
195 |
Q |
| |
|
|||||||| ||||||||||| || | ||| | ||||| | | ||| ||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
39463661 |
gagagcatatattttggtgttccacttgccacttggccgatctttgctgaacaacagacaaatgcttttgaactggtgtgtgagtt |
39463576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 43311728 - 43311566
Alignment:
| Q |
16 |
tggaagggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagc |
115 |
Q |
| |
|
|||||||||| |||||||||| || || |||||| |||| || || ||||| | ||||| |||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
43311728 |
tggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgtggttggaattcgactctcgagagc |
43311629 |
T |
|
| Q |
116 |
atttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgctttt |
178 |
Q |
| |
|
|| |||| |||||||||||| ||| |||||||||| | ||| || ||||| || ||||||||| |
|
|
| T |
43311628 |
atatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgctttt |
43311566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University