View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12027_low_4 (Length: 421)

Name: NF12027_low_4
Description: NF12027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12027_low_4
NF12027_low_4
[»] chr1 (12 HSPs)
chr1 (7-176)||(30809197-30809366)
chr1 (237-409)||(30809019-30809191)
chr1 (265-409)||(30801549-30801693)
chr1 (7-103)||(30801864-30801960)
chr1 (13-101)||(30750547-30750635)
chr1 (13-101)||(30752358-30752446)
chr1 (229-326)||(30784175-30784272)
chr1 (13-101)||(30762692-30762780)
chr1 (23-103)||(30797527-30797607)
chr1 (262-330)||(30741781-30741849)
chr1 (13-103)||(30742052-30742142)
chr1 (38-99)||(30795443-30795504)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 30809366 - 30809197
Alignment:
Q  7 ccagtgattgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttctta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30809366 ccagtgattgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttctta 30809267  T
Q  107 gtttacactaatttcttttttcaagtttataactttgttcaatgcactagttaaatatttatatattata 176  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  30809266 gtttacactaatttctttttccaagtttataactttgtccaatgcactagttaaatatttatatactata 30809197  T

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Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 237 - 409
Target Start/End: Complemental strand, 30809191 - 30809019
Alignment:
Q  237 cagattatcaatcacggagtcccggagaatcaaatgaaagaaacaatgaatgttttcaaggaggtgtttcatatgcctgatgagtacaagaaaagtttgt 336  Q
    |||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30809191 cagattatcaatcatggagtcccagtgaatcaaatgaaagaaacaatgaatgtttttaaggaggtgtttcatatgcctgatgagtacaagaaaagtttgt 30809092  T
Q  337 gttctaatgacccttcaaaaccatgtaagatgtttactagtagtatcaactatgacagtgaaaaggttcatct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30809091 gttctaatgacccttcaaaaccatgtaagatgtttactagtagtatcaactatgacagtgaaaaggttcatct 30809019  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 265 - 409
Target Start/End: Complemental strand, 30801693 - 30801549
Alignment:
Q  265 atcaaatgaaagaaacaatgaatgttttcaaggaggtgtttcatatgcctgatgagtacaagaaaagtttgtgttctaatgacccttcaaaaccatgtaa 364  Q
    |||||||||| |||||||||| | |||| |||||| | ||||||||||||||||||||||||||||  |||||| ||||||||||||| || ||||| ||    
T  30801693 atcaaatgaaggaaacaatgagtatttttaaggagatttttcatatgcctgatgagtacaagaaaaacttgtgtactaatgacccttccaagccatgcaa 30801594  T
Q  365 gatgtttactagtagtatcaactatgacagtgaaaaggttcatct 409  Q
    |||||||||||| ||| |||||||||  | |||||||||||||||    
T  30801593 gatgtttactagcagtttcaactatgcaactgaaaaggttcatct 30801549  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 30801960 - 30801864
Alignment:
Q  7 ccagtgattgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc 103  Q
    |||||||||||||| |||||||||   |||||||||||||  ||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||    
T  30801960 ccagtgattgatctaagtgaagcatgtaagggtgatagaagcaatataatcaagaaaattatcaaagctgctgaggagtttggattctttcaggttc 30801864  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 30750635 - 30750547
Alignment:
Q  13 attgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt 101  Q
    ||||||||||||||||||||||| ||||||||||| || | ||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  30750635 attgatcttagtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt 30750547  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 30752446 - 30752358
Alignment:
Q  13 attgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt 101  Q
    ||||||||||||||||||||||| ||||||||||| || | ||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  30752446 attgatcttagtgaagcacaaaatggtgatagaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggt 30752358  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 30784272 - 30784175
Alignment:
Q  229 gattgaagcagattatcaatcacggagtcccggagaatcaaatgaaagaaacaatgaatgttttcaaggaggtgtttcatatgcctgatgagtacaag 326  Q
    |||||||| || |||||||||| ||| || |   ||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  30784272 gattgaagtaggttatcaatcatggaatctcaatgaatcaaatgaaagaaacaatgagtgttttcaaggaggtgtttgagatgcctaatgagtacaag 30784175  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 30762780 - 30762692
Alignment:
Q  13 attgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt 101  Q
    ||||||||||||||||||||||| || |||||||| || | ||| ||  |||| ||||| |||||||||||||||||||||||||||||    
T  30762780 attgatcttagtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggagtttggattctttcaggt 30762692  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 30797607 - 30797527
Alignment:
Q  23 gtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc 103  Q
    |||||||||| |||||||||||||| || |||||||| ||||| || |||||| || || |||||||||||||| ||||||    
T  30797607 gtgaagcacataagggtgatagaaccaaaataattcaaaaaattattaaagctgctcagaagtttggattctttaaggttc 30797527  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 30741849 - 30741781
Alignment:
Q  262 agaatcaaatgaaagaaacaatgaatgttttcaaggaggtgtttcatatgcctgatgagtacaagaaaa 330  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| | |||| | |||| ||||||||||    
T  30741849 agaatgaaatgaaggaaacaatgagtattttcaaggaggtgtttgagatgcgttatgaatacaagaaaa 30741781  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 30742142 - 30742052
Alignment:
Q  13 attgatcttagtgaagcacaaaagggtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggttc 103  Q
    |||||||| | |||||| ||||| |||||||||  | | | ||||||  |||| ||||| ||| || ||||||||||||||||||||||||    
T  30742142 attgatctcaatgaagctcaaaacggtgatagagatcacacaattcaacaaattatcaaggctgctcaggagtttggattctttcaggttc 30742052  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 30795504 - 30795443
Alignment:
Q  38 gtgatagaactaatataattcagaaaatgatcaaagcttctgaggagtttggattctttcag 99  Q
    |||||||||| ||||||||||| ||| | || |||||| || |||||||| |||||||||||    
T  30795504 gtgatagaaccaatataattcaaaaagttattaaagctgctcaggagttttgattctttcag 30795443  T

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