View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12028_high_2 (Length: 316)
Name: NF12028_high_2
Description: NF12028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12028_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 130 - 298
Target Start/End: Original strand, 37710770 - 37710941
Alignment:
| Q |
130 |
tgttggtttagaatgagggaaggaagttttattgaagtgtacatactctgttttatgttgtaaaatatcatatcctagtagagttgtgggtccaaattgg |
229 |
Q |
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| T |
37710770 |
tgttggtttagaatgagggaaggtagttttattgaagtgtacatactctgttttatgttgtaaaatatcatatcctagtagagttgtgggtccaaattgg |
37710869 |
T |
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| Q |
230 |
caacgaaactaaattaaagaacccaaattgattggttgc----attggagatggtatgaaaaataaacatatg |
298 |
Q |
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| T |
37710870 |
caacgaaaataaatt-aagaacccaaattgattggttgcattaattggagatggtatgaaaaataaacatatg |
37710941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37710600 - 37710730
Alignment:
| Q |
1 |
tcatcttcagttgtgtgtggtatttccaagatatttttgcaatctctttgttggatggttttctgattcagtagatagagacatggtgctttgtgttgga |
100 |
Q |
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| T |
37710600 |
tcatcttcagttgtgtgtggtattcccaagatatttttgcaatctctttgttggatggttttctgattcagtagatagagacatggtgctttgtgttgga |
37710699 |
T |
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| Q |
101 |
cactagcattaacaatgtttcttcttcaatg |
131 |
Q |
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| T |
37710700 |
cactagcattaacaatgtttcttcttcaatg |
37710730 |
T |
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