View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12028_low_1 (Length: 798)
Name: NF12028_low_1
Description: NF12028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12028_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 176 - 785
Target Start/End: Original strand, 41230365 - 41230967
Alignment:
| Q |
176 |
aaagatggtggtacagtcgtacctcaaaaggttctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230365 |
aaagatggtggtacagtcgtacctcaaaaggctctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgag |
41230464 |
T |
|
| Q |
276 |
agtggcctggttaataaaatgcaggagttttctcagccgcaatgtgctgaagcatatccaagtgaaataaagacacaagaagttggcattcgtttagggc |
375 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230465 |
agtcgcctggttgataaaatgcaggagttttctcagccacaatgtgctgaagcatatccaactgaaataaagacacaagaagttggcattcgtttagggc |
41230564 |
T |
|
| Q |
376 |
agacattggatcatgcaggacagtcgaactggaggtaaatttctgtctttcactacaataaga-ttttttcgactcatgagaaagagctattctgcaaat |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41230565 |
agacattggatcatgcaggacagtcgaactggaggtaaa--------tttcactacaataagatttttttcgactcatgagaaagagctattctccaaat |
41230656 |
T |
|
| Q |
475 |
tgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgactattctccacaatttgatattttctcttgtaagctttcatcccagcaacttcaaga |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230657 |
tgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgagtattctccactattggatattttctcttgtaagctttcatcccagcaacttcaaga |
41230756 |
T |
|
| Q |
575 |
aggaaattgctaaaattcccttttattcnnnnnnnnnnnccttctttctgatgttttaaaatttcttctagtagtaatcggttgattaaatctactctaa |
674 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
41230757 |
aggaaattgctaaaattcccttttattctttttttttttccttctttctaatgttttaaaatttcttctagtagtaatcggttgattgagtctactctaa |
41230856 |
T |
|
| Q |
675 |
gctgctgcatctccttaaaaatctaccttgaagggagggatgcaagaaagttatcaagcgtatgaattttgcaggaaggagctccttctggaagctttac |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41230857 |
gctgctgcatctccttaaaaatctaccttgaagggagggatgcaagaaagttatcaagcgtatgaattttgcaggaaggagctccttctggaagctttac |
41230956 |
T |
|
| Q |
775 |
gggttttatgt |
785 |
Q |
| |
|
||||||||||| |
|
|
| T |
41230957 |
gggttttatgt |
41230967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42786595 - 42786696
Alignment:
| Q |
18 |
attgcttgtcatttatgtaaactagatgctgactcgtgcaacgcgtgagaaaactttaaaat-aaaacaatcttggggaaacttaatatgtgatgtaaac |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42786595 |
attgcttgtcatttatttaaactagatgctgaatcgtgcaacgcgcgggaaaactttaaaataaaaaaaatcttggggaaacttaatatgtgatgtaaac |
42786694 |
T |
|
| Q |
117 |
tt |
118 |
Q |
| |
|
|| |
|
|
| T |
42786695 |
tt |
42786696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 240 - 428
Target Start/End: Original strand, 42413870 - 42414057
Alignment:
| Q |
240 |
cagaactcttgcacaaacccaaacatggaagacgagagtggcctggttaataaaatgcaggagttttctcagccgcaatgtgctgaagcatatccaagtg |
339 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| ||||||||||||||| |||| ||||| || |||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
42413870 |
cagagctcttgtacaaggccaaacatggaagctgagagtggcctggttgataacatgcatgaattttctcagctgaaatgtgcggaagcatatccaagtg |
42413969 |
T |
|
| Q |
340 |
aaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtctttcac |
428 |
Q |
| |
|
|||||||||||| |||| ||| ||||| |||||| ||| | | |||| ||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
42413970 |
aaataaagacacgagaacttgacattcatttaggccaggc-tgtgatcgcgcaggacagtcacgccggaggtaaatttctttctttcac |
42414057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 578
Target Start/End: Original strand, 42414337 - 42414443
Alignment:
| Q |
472 |
aattgcagtctcaaaaatgcatcaa-tacttgcacatgcaagtttgactattctccacaatttgatattttctcttgtaagctttcatcccagcaacttc |
570 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||| ||||||||||| |||||||||| || ||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
42414337 |
aattgcagtctcaaaaattcatcaattgattgcacaggcaagtttgaccattctccacagttggat-ctttctctcagaagctctcatcccagcaacttt |
42414435 |
T |
|
| Q |
571 |
aagaagga |
578 |
Q |
| |
|
||||||| |
|
|
| T |
42414436 |
gagaagga |
42414443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 21239596 - 21239638
Alignment:
| Q |
146 |
gttttatcatagacatgctattagctaattaaagatggtggta |
188 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
21239596 |
gttttatcatagacattctataagctaattaaagatgatggta |
21239638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 48992454 - 48992371
Alignment:
| Q |
102 |
atatgtgatgtaaacttattatgtagtacaaagaatgtttctgtgttttatcatagacatgctattagctaattaaagatggtggta |
188 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| | ||||| || ||| ||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
48992454 |
atatgtgatgaaaactcattatgtggtagacagaataatt-tgt-ttttatcatagacattctattagctaattaaa-atggtggta |
48992371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University