View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12028_low_3 (Length: 284)

Name: NF12028_low_3
Description: NF12028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12028_low_3
NF12028_low_3
[»] chr3 (2 HSPs)
chr3 (21-284)||(37710183-37710427)
chr3 (1-29)||(7251298-7251326)
[»] chr4 (2 HSPs)
chr4 (21-202)||(45262644-45262818)
chr4 (28-66)||(16007235-16007273)
[»] chr1 (1 HSPs)
chr1 (21-202)||(47865696-47865870)
[»] chr7 (3 HSPs)
chr7 (106-202)||(7124398-7124487)
chr7 (106-202)||(28914996-28915103)
chr7 (21-73)||(7124546-7124597)
[»] chr6 (1 HSPs)
chr6 (1-29)||(8743181-8743209)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 37710183 - 37710427
Alignment:
Q  21 tagtaattaaggagaggaaagctaatcagttagacgtatcttaggcgtgtcggtgacgcatcggaannnnnnnnnnnnnnnnnnnaattaaaaaatttcg 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||                   |||||||||||||||    
T  37710183 tagtaattaaggagaggaaagctaaacagttagacgtatcttaggcgtgtcggtgatgcatcggaattttttatttttattttttaattaaaaaatttcg 37710282  T
Q  121 gatactccttcgatacgtatcgacatatcggagcgtatcagatacgattcggatgctatttagacgtatcggtgcttcatagttgtggaacgagaaaggt 220  Q
    |||||||||||||||||||||                  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  37710283 gatactccttcgatacgtatc------------------agatacgattcgga-gctatttagacgtatcggtacttcatagttgtggaacgagaaaggt 37710363  T
Q  221 gcatggagctgacaccttctttcttgcataatttttggttgagagatgatatttgtacaatcat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37710364 gcatggagctgacaccttctttcttgcataatttttggttgagagatgatatttgtacaatcat 37710427  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7251298 - 7251326
Alignment:
Q  1 ataattagggacggagggagtagtaatta 29  Q
    |||||||||||||||||||||||||||||    
T  7251298 ataattagggacggagggagtagtaatta 7251326  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 45262818 - 45262644
Alignment:
Q  21 tagtaattaaggagaggaaagctaatcagttagacgtatcttaggcgtgtcggtgacgcatcggaannnnnnnnnnnnnnnnnnnaattaaaaaatttcg 120  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||  |||||||                   |||||||||||||||    
T  45262818 tagtaattaaggagaggaaagctaaacagttaaacgtatcttaggcatgtcggtgacatatcggaattttttttt----------aattaaaaaatttcg 45262729  T
Q  121 gatactccttcgatacgtatcga---catatcggagcgtatcagatacgattcggatgctatttagacgtatcggtgcttcatag 202  Q
    |||||||||||||||||||||||   | ||||| | |||||| ||||| ||||||||||  ||||| ||||||||||||||||||    
T  45262728 gatactccttcgatacgtatcgatggcgtatcgtaacgtatcggatacaattcggatgccttttaggcgtatcggtgcttcatag 45262644  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 16007235 - 16007273
Alignment:
Q  28 taaggagaggaaagctaatcagttagacgtatcttaggc 66  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  16007235 taaggagaggaaagctaaaaagttagacgtatcttaggc 16007273  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 47865696 - 47865870
Alignment:
Q  21 tagtaattaaggagaggaaagctaatcagttagacgtatcttaggcgtgtcggtgacgcatcggaannnnnnnnnnnnnnnnnnnaattaaaaaatttcg 120  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||  |||||||                   |||||||||||||||    
T  47865696 tagtaattaaggagaggaaagctaaacagttaaacgtatcttaggcatgtcggtgacatatcggaattttttttt----------aattaaaaaatttcg 47865785  T
Q  121 gatactccttcgatacgtatcga---catatcggagcgtatcagatacgattcggatgctatttagacgtatcggtgcttcatag 202  Q
    |||||||||||||||||||||||   | ||||| | |||||| ||||| ||||||||||  ||||| ||||||||||||||||||    
T  47865786 gatactccttcgatacgtatcgatggcgtatcgtaacgtatcggatacaattcggatgccttttaggcgtatcggtgcttcatag 47865870  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 7124487 - 7124398
Alignment:
Q  106 aattaaaaaatttcggatactccttcgatacgtatcgacatatcggagcgtatcagatacgattcggatgctatttagacgtatcggtgcttcatag 202  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||| ||||||||  ||||||||||||||||||    
T  7124487 aattaaaaaatttcggatactccttcgatacgtatcgac-------ggcgtatcggatacgattcggaagctatttaagcgtatcggtgcttcatag 7124398  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 28915103 - 28914996
Alignment:
Q  106 aattaaaaaatttcggatactccttcgatacgtatcgac---atatcggag--------cgtatcagatacgattcggatgctatttagacgtatcggtg 194  Q
    |||||||||||| |||||||||||| |||| ||||||||   |||||||||        |||||| ||||||||||||  ||||||||| ||||||||||    
T  28915103 aattaaaaaattccggatactcctttgatatgtatcgacggcatatcggagtatcgggacgtatcggatacgattcggtggctatttaggcgtatcggtg 28915004  T
Q  195 cttcatag 202  Q
    ||||||||    
T  28915003 cttcatag 28914996  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 7124597 - 7124546
Alignment:
Q  21 tagtaattaaggagaggaaagctaatcagttagacgtatcttaggcgtgtcgg 73  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||| ||||||    
T  7124597 tagtaattaaggagaggaaagctaaacaatta-acgtatcttaggcatgtcgg 7124546  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8743209 - 8743181
Alignment:
Q  1 ataattagggacggagggagtagtaatta 29  Q
    |||||||||||||||||||||||||||||    
T  8743209 ataattagggacggagggagtagtaatta 8743181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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