View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12028_low_4 (Length: 238)
Name: NF12028_low_4
Description: NF12028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12028_low_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 6100463 - 6100241
Alignment:
| Q |
16 |
atatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacactgaagaaaaataaaagcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6100463 |
atatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacactgaagaaaaataaaagcta |
6100364 |
T |
|
| Q |
116 |
ggattcataagtataatacatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaaacactaaacacatgataactatatagttaaaggg |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6100363 |
ggattcataagtataataaatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaagcactaaacacatgataactatatagttaaaggg |
6100264 |
T |
|
| Q |
216 |
aataaatactcagcatggagtcc |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6100263 |
aataaatactcagcatggagtcc |
6100241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 364330 - 364536
Alignment:
| Q |
16 |
atatcttctagtaattttatagttcaatacctttgtcttattta----ccccattcacctatatttaccatgttttcatgaacactgaagaaaaataaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
364330 |
atatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacaccgaagaaaaataaaa |
364429 |
T |
|
| Q |
112 |
gctaggattcataagtataatacatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaaacactaaacacatgataactatatagttaa |
211 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
364430 |
gttaggattcataagtataataaatactcaaaatgaagaccata-aaaagggcatgttcatatctacaaaacactaaacacatgttaactatatagttaa |
364528 |
T |
|
| Q |
212 |
agggaata |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
364529 |
agggaata |
364536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University