View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_high_1 (Length: 823)
Name: NF12029_high_1
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 21 - 823
Target Start/End: Complemental strand, 29145947 - 29145151
Alignment:
| Q |
21 |
agatccaagtgagggccaaaattgtgcattcttcacctttgatatgcttgccaacacactaaatggagtcacatccccaactattgtcaccttctttgca |
120 |
Q |
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| T |
29145947 |
agatccaagtgatggccaaaattgtgcattcttcacctttgatatgcttgccaacacactaaatggagtcacatccccaactattgtcaccttctttgca |
29145848 |
T |
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| Q |
121 |
gcaaaatctatgttgaaggaggtaactcctgccaataaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattg |
220 |
Q |
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| T |
29145847 |
gcaaaatctatgttgaaggaggtaactcctgccaataaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattg |
29145748 |
T |
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| Q |
221 |
accgttcgatcttaaattgaacagtgaaagattatttaaagatggtttcaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145747 |
accgttcgatcttaaattgaacagtgaaagattatttaaagatagttttaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgta |
29145648 |
T |
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| Q |
321 |
cataatcgagtccttaccttgcattttagagatgtgtttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgctca |
420 |
Q |
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| T |
29145647 |
cataatcgagtccttaccttgcattttagagatgtgtttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgctca |
29145548 |
T |
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| Q |
421 |
aatatttactcaaatcatcaattattgaacattcaagttgtggacaacggtccaattcaattcgcttcataaaactagtcatggttattctacaaatata |
520 |
Q |
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| T |
29145547 |
aatatttactcaaatcatcaattattgaacattcaagttgtggacaacggtccaattcaattcgcttcataaaactagtcatggttattctacaaatata |
29145448 |
T |
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| Q |
521 |
tgcttccaaacttgcttagttatattcacgaagcatatcataaatttaaaattagagagcccttagaaagcaataaatgcagaaaattaagattggaaaa |
620 |
Q |
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| T |
29145447 |
tgcttccaaacttgcttagttatattcacgaagcatatcataaatttaaaattagagagcccttagaaagcaataaatgcagaaaattaagattggaaaa |
29145348 |
T |
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| Q |
621 |
tcctaaacaagtgccaaaaaagaaaacgtatgaagcattgacactggacacgacattgccacttctcattgacaccagtaataatttgagagaatgtaac |
720 |
Q |
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| T |
29145347 |
tcctaaacaagtgccaaaaaa-aaaacgtatgaagcattgacactggacacgacattgccacttctcattgaca-cagtaataatttgagagaatgtaac |
29145250 |
T |
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| Q |
721 |
cacgagtgtcaaatgtgtccgacatgtgttggatatatactagacacaccttcaatttaaagtgtcgatgctacgagaaaagaaaactaacctggcttga |
820 |
Q |
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| T |
29145249 |
cacgagtgtcaaatgtgtccgacatgtgttgg----atactagacacaccttcaatttaaagtgttgatgctacgagaaaagaaaactaacctggcttga |
29145154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 40454512 - 40454393
Alignment:
| Q |
34 |
ggccaaaattgtgcattcttcacctttgatatgcttgccaacacactaaatggagtcacatccccaactattgtcaccttctttgcagcaaaatctatgt |
133 |
Q |
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||||||| ||||||| |||||||||||||||||||||||| || || |||||||| ||||| ||||||| ||| |||||||| || ||||| ||||||| |
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| T |
40454512 |
ggccaaatttgtgcagtcttcacctttgatatgcttgccattacgctcaatggagttacatcaccaactactgtaaccttcttggctgcaaagtctatgt |
40454413 |
T |
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| Q |
134 |
tgaaggaggtaactcctgcc |
153 |
Q |
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| T |
40454412 |
tgaaggacgtaacccctgcc |
40454393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 40454106 - 40454024
Alignment:
| Q |
335 |
taccttgcattttagagatgtgtttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgc |
417 |
Q |
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||||||||||| | |||| |||||||| | |||||||||||| ||||| ||||||| |||||||||||| |||||||||||| |
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| T |
40454106 |
taccttgcattctggagagatgtttcctgaccttcccttcacaacctttacaatgcagagaaaccctcaacaccacaacctgc |
40454024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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