View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_high_14 (Length: 461)
Name: NF12029_high_14
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 2529658 - 2529223
Alignment:
| Q |
16 |
caaaatgatatccgaaaaatagctaatgaaaacggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatctt |
115 |
Q |
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| T |
2529658 |
caaaatgatatccgaaaaatacctaatgaaaacggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatcat |
2529559 |
T |
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| Q |
116 |
tgttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaagg |
215 |
Q |
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| T |
2529558 |
tgttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaagg |
2529459 |
T |
|
| Q |
216 |
ctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagt |
315 |
Q |
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| T |
2529458 |
ctcaagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagt |
2529359 |
T |
|
| Q |
316 |
tgcccttctgttcttagctccagtcctagttgtgaaccgggttttgtttctccttgtaactcgaaaagttccgttgagcttgttaaaggtgatgatggac |
415 |
Q |
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| T |
2529358 |
tgcccttctgttcttagctccagtcctagctgtgaaccgggttttgtttcgccttgtaactcgaaaagttccgttgagcttgttaaaggtgatgatggac |
2529259 |
T |
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| Q |
416 |
tcaattactttgcacttggatttcttccaccttctt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2529258 |
tcaattactttgcacttggatttcttccaccttctt |
2529223 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 31027917 - 31027961
Alignment:
| Q |
233 |
caacaagaatacctcaagattcttgtagtacaccacaaccttgtg |
277 |
Q |
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||||||||||||| ||||||| |||| |||||||| ||||||||| |
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| T |
31027917 |
caacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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