View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_high_18 (Length: 433)

Name: NF12029_high_18
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_high_18
NF12029_high_18
[»] chr7 (3 HSPs)
chr7 (19-418)||(48085153-48085532)
chr7 (286-331)||(48102491-48102536)
chr7 (292-356)||(1809526-1809590)
[»] chr6 (1 HSPs)
chr6 (289-356)||(7385568-7385635)
[»] chr1 (3 HSPs)
chr1 (280-418)||(35376267-35376405)
chr1 (279-359)||(35357711-35357791)
chr1 (298-358)||(35364521-35364581)
[»] chr4 (1 HSPs)
chr4 (319-411)||(6339168-6339260)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 48085532 - 48085153
Alignment:
Q  19 agacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaaaccactagctatggaatacaaaacaaaagattaatggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  48085532 agacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaaaccactagctatggaatacaaaacaaaag---------- 48085443  T
Q  119 aaattaaagggacacagataaagaaaatacacacataaactaacnnnnnnncattaaccaaatgtcttggatggattgatcaagtcctggaatctaaggc 218  Q
              ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085442 ----------gacacagataaagaaaatacacacataaactaacaaaaaaacattaaccaaatgtcttggatggattgatcaagtcctggaatctaaggc 48085353  T
Q  219 catgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggatttggttgactatgattttgtttgccttttcagatggatggaatgca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48085352 catgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggattcggttgactatgattttgtttgccttttcagatggatggaatgca 48085253  T
Q  319 tcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttg 418  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085252 tcccaaaaagcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttg 48085153  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 48102536 - 48102491
Alignment:
Q  286 attttgtttgccttttcagatggatggaatgcatcccaaaatgcat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48102536 attttgtttgccttttcagatggatggaatgcatcccaaaatgcat 48102491  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 1809590 - 1809526
Alignment:
Q  292 tttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt 356  Q
    ||||||||||||||||||||||||| |||||||||| |||  |  |||||||| |||||||||||    
T  1809590 tttgccttttcagatggatggaatggatcccaaaatacatacaagtctctgttagggcacaagtt 1809526  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 7385568 - 7385635
Alignment:
Q  289 ttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||| |||||||||    
T  7385568 ttgtttgccttttcagatggatggaatgcatcccaaaatgcatttaagtctctatttgagcacaagtt 7385635  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 35376267 - 35376405
Alignment:
Q  280 actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaa 379  Q
    ||||||||| || | || ||||||||||||||||||| |||||||||||||| ||| ||||  ||| |||||||||||||    ||||| || || ||||    
T  35376267 actatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcacaagtttgaaaggggtgtgcatagtccaa 35376366  T
Q  380 gtccattgtatggcccttgtccacagcatgctacctttg 418  Q
      |||||||| || ||||||||||| || |||| |||||    
T  35376367 tcccattgtaagggccttgtccacaacaagctatctttg 35376405  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 35357711 - 35357791
Alignment:
Q  279 gactatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttga 359  Q
    |||||||||| || | || |||||||||||||| ||||||||||||||||||| ||| | ||  ||||||||||| |||||    
T  35357711 gactatgattctgctagctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttga 35357791  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 35364521 - 35364581
Alignment:
Q  298 ttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttg 358  Q
    |||||||||||||||| || ||||||||||||||  || ||||  ||| ||||||||||||    
T  35364521 ttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttg 35364581  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 411
Target Start/End: Original strand, 6339168 - 6339260
Alignment:
Q  319 tcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgct 411  Q
    ||||||||||||| ||| || || || ||||||||||| || ||||| ||||| || |||| ||||||| |||| ||||| ||||| ||||||    
T  6339168 tcccaaaatgcataaagatccctattagggcacaagttagaagctggagtacatagtccaactccattgaatggtccttgaccacaacatgct 6339260  T

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