View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_high_39 (Length: 241)
Name: NF12029_high_39
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_high_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31513010 - 31513232
Alignment:
| Q |
1 |
catatgtttacaccagcttgagggggagtgtagataaattaagaatgcttgaatctatgggtttaaataaattaggcaattaaaatcctagaattaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31513010 |
catatgtttacaccagcttgagggggagtgtagataaattaagaatgcttgaatctatgggtttaaataaattaggcaattaaaatcctagaattaatgt |
31513109 |
T |
|
| Q |
101 |
aaggattagtcaaatccttaatcatgaggttgatctttcccttttttatttcttaggattctgattcttttaaataagagacatgtctccctctgtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31513110 |
aaggattagtcaaatccttaatcatgaggttgatctttcccttttttatttcttaggattctgattcttttaaataagagacatgtctccctctgtttct |
31513209 |
T |
|
| Q |
201 |
tgttctatttaagatgtactaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31513210 |
tgttctatttaagatgtactaag |
31513232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 42597531 - 42597498
Alignment:
| Q |
88 |
ctagaattaatgtaaggattagtcaaatccttaa |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
42597531 |
ctagaattcatgtaaggattagtcaaatccttaa |
42597498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 42572289 - 42572257
Alignment:
| Q |
92 |
aattaatgtaaggattagtcaaatccttaatca |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
42572289 |
aattaatgtaaggattagtcaaatacttaatca |
42572257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University