View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_high_40 (Length: 241)

Name: NF12029_high_40
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_high_40
NF12029_high_40
[»] scaffold1301 (1 HSPs)
scaffold1301 (1-233)||(1658-1890)
[»] chr7 (15 HSPs)
chr7 (83-231)||(14816638-14816786)
chr7 (83-231)||(15263634-15263782)
chr7 (83-231)||(46254870-46255021)
chr7 (83-223)||(35794491-35794631)
chr7 (87-231)||(43458191-43458334)
chr7 (83-231)||(25529091-25529239)
chr7 (83-231)||(34847857-34848008)
chr7 (83-223)||(33950943-33951086)
chr7 (83-231)||(36312064-36312214)
chr7 (85-130)||(44866155-44866200)
chr7 (115-230)||(1377355-1377470)
chr7 (152-231)||(42321186-42321265)
chr7 (170-231)||(44863021-44863082)
chr7 (147-231)||(31326669-31326753)
chr7 (171-231)||(1852154-1852214)
[»] chr5 (22 HSPs)
chr5 (83-231)||(27114309-27114457)
chr5 (83-233)||(8197411-8197564)
chr5 (83-231)||(8734699-8734846)
chr5 (83-231)||(37012829-37012977)
chr5 (98-229)||(37883431-37883562)
chr5 (83-231)||(12785159-12785310)
chr5 (83-231)||(18808986-18809137)
chr5 (98-231)||(37030261-37030394)
chr5 (85-231)||(3556626-3556772)
chr5 (83-231)||(12723676-12723827)
chr5 (83-231)||(38679434-38679585)
chr5 (98-229)||(26279041-26279172)
chr5 (87-223)||(13822058-13822197)
chr5 (89-231)||(16513581-16513725)
chr5 (98-231)||(25977135-25977264)
chr5 (98-231)||(9715312-9715445)
chr5 (98-221)||(11719938-11720061)
chr5 (83-189)||(8299204-8299313)
chr5 (174-223)||(15858831-15858880)
chr5 (186-229)||(2606076-2606119)
chr5 (2-41)||(25976975-25977014)
chr5 (174-223)||(23252487-23252536)
[»] chr4 (31 HSPs)
chr4 (83-231)||(33281091-33281239)
chr4 (83-231)||(51538650-51538798)
chr4 (85-231)||(52416917-52417066)
chr4 (85-231)||(31093111-31093257)
chr4 (85-231)||(35158724-35158870)
chr4 (83-231)||(16023878-16024026)
chr4 (83-223)||(28780760-28780900)
chr4 (83-231)||(1602789-1602936)
chr4 (83-223)||(40728039-40728179)
chr4 (83-223)||(45229083-45229223)
chr4 (83-231)||(49374323-49374470)
chr4 (98-231)||(168540-168673)
chr4 (85-233)||(45462254-45462402)
chr4 (98-229)||(38551270-38551401)
chr4 (98-231)||(2013733-2013866)
chr4 (98-231)||(4189874-4190007)
chr4 (85-231)||(30003616-30003764)
chr4 (98-231)||(28310890-28311024)
chr4 (98-231)||(4048138-4048271)
chr4 (83-233)||(43841859-43842012)
chr4 (90-231)||(9036089-9036232)
chr4 (98-231)||(6963459-6963592)
chr4 (83-231)||(38218247-38218398)
chr4 (98-219)||(45924615-45924736)
chr4 (90-231)||(55136670-55136814)
chr4 (98-231)||(15542841-15542973)
chr4 (83-216)||(56463631-56463767)
chr4 (98-231)||(16451935-16452068)
chr4 (98-231)||(35319896-35320029)
chr4 (171-223)||(20516682-20516734)
chr4 (171-231)||(39807350-39807410)
[»] chr8 (20 HSPs)
chr8 (85-231)||(39318582-39318728)
chr8 (85-231)||(8239974-8240120)
chr8 (85-231)||(40105236-40105382)
chr8 (85-230)||(35684002-35684147)
chr8 (87-231)||(11076233-11076377)
chr8 (98-231)||(6347300-6347433)
chr8 (98-231)||(37098338-37098471)
chr8 (98-231)||(43098545-43098678)
chr8 (83-231)||(39260274-39260425)
chr8 (98-229)||(20091867-20091998)
chr8 (98-231)||(23144107-23144241)
chr8 (98-223)||(627387-627512)
chr8 (98-231)||(32337815-32337948)
chr8 (98-223)||(586411-586536)
chr8 (98-231)||(31701047-31701177)
chr8 (140-231)||(32947084-32947175)
chr8 (83-130)||(42131885-42131932)
chr8 (98-137)||(13546259-13546298)
chr8 (98-137)||(13678175-13678214)
chr8 (199-231)||(42131969-42132001)
[»] chr3 (23 HSPs)
chr3 (83-231)||(47646921-47647072)
chr3 (83-231)||(26502173-26502324)
chr3 (83-231)||(149331-149479)
chr3 (84-231)||(47013701-47013848)
chr3 (83-231)||(10509203-10509354)
chr3 (98-231)||(32529804-32529937)
chr3 (83-231)||(36402692-36402843)
chr3 (83-233)||(39586576-39586726)
chr3 (98-231)||(6936472-6936605)
chr3 (95-231)||(227634-227770)
chr3 (87-231)||(40937222-40937366)
chr3 (98-231)||(41193717-41193850)
chr3 (98-223)||(39353310-39353435)
chr3 (98-229)||(49166110-49166240)
chr3 (103-231)||(31765207-31765335)
chr3 (140-229)||(41174816-41174905)
chr3 (85-130)||(41182006-41182051)
chr3 (170-231)||(33843521-33843582)
chr3 (170-231)||(42899222-42899283)
chr3 (170-231)||(51329000-51329061)
chr3 (4-68)||(32530017-32530081)
chr3 (165-223)||(53393958-53394016)
chr3 (170-230)||(25214606-25214666)
[»] chr2 (22 HSPs)
chr2 (83-223)||(44760105-44760245)
chr2 (83-223)||(6404128-6404268)
chr2 (83-231)||(15911780-15911931)
chr2 (98-231)||(13278698-13278831)
chr2 (83-231)||(17308962-17309112)
chr2 (83-223)||(30490662-30490805)
chr2 (83-231)||(38703569-38703719)
chr2 (85-231)||(17137689-17137842)
chr2 (83-231)||(45117075-45117230)
chr2 (98-231)||(7942742-7942875)
chr2 (98-231)||(31994077-31994210)
chr2 (98-229)||(1209930-1210062)
chr2 (102-228)||(18137596-18137722)
chr2 (153-231)||(38207489-38207567)
chr2 (83-157)||(38208410-38208487)
chr2 (140-221)||(1114722-1114803)
chr2 (170-231)||(21485330-21485391)
chr2 (170-233)||(37127964-37128027)
chr2 (98-130)||(1115204-1115236)
chr2 (1-33)||(7942582-7942614)
chr2 (1-33)||(31993916-31993948)
chr2 (170-230)||(33945933-33945993)
[»] chr1 (24 HSPs)
chr1 (83-231)||(37952305-37952453)
chr1 (87-229)||(29961404-29961546)
chr1 (83-233)||(44496488-44496638)
chr1 (98-229)||(41086406-41086537)
chr1 (98-229)||(41091174-41091305)
chr1 (83-231)||(14587322-14587476)
chr1 (98-231)||(11952421-11952554)
chr1 (86-223)||(42882578-42882715)
chr1 (98-231)||(50261992-50262125)
chr1 (98-223)||(41900288-41900413)
chr1 (98-231)||(49851713-49851846)
chr1 (83-231)||(33801368-33801519)
chr1 (98-231)||(38860681-38860814)
chr1 (100-231)||(52632362-52632493)
chr1 (98-233)||(12528448-12528583)
chr1 (98-231)||(23984039-23984169)
chr1 (83-223)||(12700521-12700664)
chr1 (83-231)||(3517560-3517708)
chr1 (90-231)||(41723533-41723676)
chr1 (103-231)||(27216803-27216931)
chr1 (148-231)||(44757581-44757664)
chr1 (83-134)||(22858800-22858851)
chr1 (83-156)||(48964913-48964986)
chr1 (182-223)||(48964984-48965025)
[»] chr6 (8 HSPs)
chr6 (83-231)||(9304938-9305086)
chr6 (83-231)||(31271354-31271502)
chr6 (99-231)||(31318539-31318671)
chr6 (85-228)||(31722855-31723001)
chr6 (83-231)||(439036-439187)
chr6 (83-231)||(16395320-16395471)
chr6 (89-231)||(303759-303904)
chr6 (115-231)||(20818537-20818653)
[»] scaffold0054 (1 HSPs)
scaffold0054 (147-228)||(19071-19152)


Alignment Details
Target: scaffold1301 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1890 - 1658
Alignment:
Q  1 ttccggaaaataaaatccgaaatgtacctttgttttacggattaaagtgataattgtgaacgagggaatggttatgttccggaatccggaaagattcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1890 ttccggaaaataaaatccgaaatgtacctttgttttacggattaaagtgataattgtgaacgagggaatggttatgttccggaatccggaaagattcaga 1791  T
Q  101 gccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1790 gccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataggcttccaact 1691  T
Q  201 tcaacaaataccttcattcttcagttcacctat 233  Q
    |||||||||||||||||||||||||||||||||    
T  1690 tcaacaaataccttcattcttcagttcacctat 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 14816638 - 14816786
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  14816638 aatccagaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcct 14816737  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  14816738 ataaataggcttccatcttcaacaaataccttcattcttcacttcacct 14816786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 15263634 - 15263782
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  15263634 aatccagaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcct 15263733  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  15263734 ataaataggcttccatcttcaacaaataccttcattcttcacttcacct 15263782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 46255021 - 46254870
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  46255021 aatccagaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 46254922  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  46254921 gctataaataggcttccatcttcaacaaataccttcattcttcacttcacct 46254870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 35794631 - 35794491
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  35794631 aatccggaaagatttagagccattaatatggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggct 35794532  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  35794531 ataaataggcttccatcttcaacaaataccttcattcttca 35794491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 43458334 - 43458191
Alignment:
Q  87 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||||    
T  43458334 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 43458235  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| || | || ||||||||||||||||||||||||| |||||||    
T  43458234 ataggc-tacatcttcaacaaataccttcattcttcacttcacct 43458191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 25529091 - 25529239
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||  || ||| |||| |||||||||||| || | |||||||||| ||    
T  25529091 aatccagaaagattcagagtcattaatgtgggtttggacggttacaaccactgacacgtattcattgattgtattaatgacctaggacttgttttaggct 25529190  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  25529191 ataaataggcttccatcttcaacaaataccttcattcttcacttcacct 25529239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 34847857 - 34848008
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||  |||||| ||||||||||||||||| || | |||||||||     
T  34847857 aatccggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttat 34847956  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| |||||||| |||||||||||||||| |||||||    
T  34847957 gctataaataggcttccatcttcaacagataccttcattcttcacttcacct 34848008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 33951086 - 33950943
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  33951086 aatccggaacgattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 33950987  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttca 223  Q
     ||||||||||| ||| | |||||||||||||||| ||||||||    
T  33950986 gctataaataagtttctatcttcaacaaatacctttattcttca 33950943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 36312064 - 36312214
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||  |||||  ||||||||||||||||| ||   ||||||||||    
T  36312064 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgtttttattgactgtattaatgacctagaacttgttttag 36312163  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     |||| ||||  |||||| |||||||||||| ||||||| |||| |||||||    
T  36312164 gctat-aatagacttccatcttcaacaaatatcttcattgttcacttcacct 36312214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 44866200 - 44866155
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaac 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  44866200 tccggaaagattcagagccattattgtgggtttggacggttacaac 44866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 1377470 - 1377355
Alignment:
Q  115 tttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaatacctt 214  Q
    |||||| |||||  ||||| |||  |||||| ||||||||| | ||||| || | ||| |||||| ||||||||| ||||||| |||||||||||  |||    
T  1377470 tttggatggttagcaccacaaacacgttttcattgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttctt 1377371  T
Q  215 cattcttcagttcacc 230  Q
    ||||||||| ||||||    
T  1377370 cattcttcacttcacc 1377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 42321186 - 42321265
Alignment:
Q  152 tgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||| || || | ||||||||||  |||||||| ||||||| |||||||||||| |||||||||||| |||||||    
T  42321186 tgtattaataacctatgacttgttttaggttataaataggcttccatcttcaacaaatatcttcattcttcacttcacct 42321265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 44863082 - 44863021
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||  ||||||||| ||||| | ||| ||||||||||||||||||||| |||||||    
T  44863082 cttgttttaagctataaatatgcttcaatcttgaacaaataccttcattcttcacttcacct 44863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 31326669 - 31326753
Alignment:
Q  147 ttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||| | |||| ||| | ||||||||| |||||||||| | || || |||||||||||  |||||||||||| |||||||    
T  31326669 ttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacct 31326753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 1852214 - 1852154
Alignment:
Q  171 ttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||| ||||| |||||||| || ||| ||||||  ||||||||||||| |||||||    
T  1852214 ttgttttaggctatatataagcttgcatcttgaacaaagtccttcattcttcacttcacct 1852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 27114457 - 27114309
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  27114457 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccaccaacacgttttcattgactgtattaatgacataggacttgttttaggct 27114358  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||||    
T  27114357 ataaataggcttccatcttcaacaaatatcttcattcttcacttcacct 27114309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 8197564 - 8197411
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  8197564 aatccggaaagatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 8197465  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| || ||||||    
T  8197464 actataaataggcttccatcttcaacaaataccttcattcttcactttacctat 8197411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 8734846 - 8734699
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  8734846 aatccggaaagattcagagccattaatgtgggtttggacgattacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggct 8734747  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| | | ||||||||||||||||||||| |||||||    
T  8734746 ataaataggcttccatc-tgaacaaataccttcattcttcacttcacct 8734699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 37012977 - 37012829
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||| ||   |||||||||| ||    
T  37012977 aatccgaaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtatgaatgacctagaacttgttttaggct 37012878  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  37012877 ataaataggcttccatcttcaacaaatactttcattcttcacttcacct 37012829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 37883562 - 37883431
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||| |||| |||||||||  ||||||||| |||||||    
T  37883562 agagccattaatgtgggtttggacggttacaaccactaacatgttttcattgactatagtaatgacctaagacttgttttaagctataaataggcttcca 37883463  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  37883462 tcttcaacaaataccttcattcttcacttcac 37883431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 12785310 - 12785159
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  12785310 aatccggaaagattcatagccgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 12785211  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||| | ||||||||||||||||||||||||| |||||||    
T  12785210 gctataaataggcttcaatcttcaacaaataccttcattcttcacttcacct 12785159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 18809137 - 18808986
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  18809137 aatccgaaaagattcagagccattaatgtaggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttag 18809038  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||  |||||| ||||||||||||||||||||||||| |||||||    
T  18809037 gctataaatagtcttccatcttcaacaaataccttcattcttcacttcacct 18808986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 37030261 - 37030394
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| |||||||||  ||||||    
T  37030261 agagccattaatgtgggtttggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagacttcca 37030360  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  37030361 tcttcaacaaataccttcattcttcacttcacct 37030394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 3556772 - 3556626
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||| ||||| ||| |||||||||||||| |||||| |||||||  |||||| ||||||||||||||||| || | |||||||||| ||||    
T  3556772 tccggaaagattcggagccgttattgtgggtttggacgattacaagcactaacacgttttcattgactgtattaatgacctaggacttgttttaggctat 3556673  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| ||||||| ||| ||||||| ||||||||||||| |||||||    
T  3556672 aaatatgcttccatctttaacaaattccttcattcttcacttcacct 3556626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 12723827 - 12723676
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  12723827 aatccggaaagattcatagtcgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 12723728  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| | || || ||||||||||||||||||||||||| |||||||    
T  12723727 gctataaataggttttcatcttcaacaaataccttcattcttcacttcacct 12723676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 38679434 - 38679585
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||   ||| | |||||||||||||||||||| | ||||||||||    
T  38679434 aatccggaaagattcagagccattaatgtggatttggacggttacaacaaccactaacacttttgcattgactgtattaatgacttaggacttgttttag 38679533  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||| | |||||||||||| || ||||||||| |||||||    
T  38679534 gctataaataggcttcaatcttcaacaaatatctacattcttcacttcacct 38679585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 26279172 - 26279041
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||||| |||||||||||||||||||||||||  |||||| ||||||||| |||||||  | | |||||||||| ||||||||| |||||||    
T  26279172 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacccaggacttgttttaggctataaataggcttcca 26279073  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  26279072 tcttcaacaaataccttcattcttcacttcac 26279041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 13822058 - 13822197
Alignment:
Q  87 cggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagacta 183  Q
    ||||||||||||||||||||||||||| |||| ||||||||||   ||||||||  |||||| ||||||||||||||||  || | |||||||||| |||    
T  13822058 cggaaagattcagagccattaatgtggatttgaacggttacaacaaccactaacacgttttcattgactgtattaatgatctatgacttgttttaggcta 13822157  T
Q  184 taaataagcttccaacttcaacaaataccttcattcttca 223  Q
    |||||| | ||||| |||||||||||||||||||||||||    
T  13822158 taaataggtttccatcttcaacaaataccttcattcttca 13822197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 16513581 - 16513725
Alignment:
Q  89 gaaagattcagagccattaatgtgggtttggacggtt--acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    ||||||||||||||||||| ||||| |||| ||| |   ||||||||||||  |||||| | ||||||||||||||| || | ||||||||| |||||||    
T  16513581 gaaagattcagagccattattgtggttttgtacgttacaacaaccactaacacgttttcatcgactgtattaatgacctatgacttgttttaaactataa 16513680  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| ||||| |  |||||||||||||||||||||||| |||||||    
T  16513681 ataggcttcaattttcaacaaataccttcattcttcacttcacct 16513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 25977135 - 25977264
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||||| |||||||||| ||||||||||||||  |||||| ||||||||| |||||||||| | ||||||||||  |||||||| |||||||    
T  25977135 agagtcattaatgtaggtttggacgattacaaccactaacacgttttcattgactgtagtaatgacttaggacttgttttaggttataaataggcttcca 25977234  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||    |||||||||||||| |||||||    
T  25977235 tcttcaac----accttcattcttcacttcacct 25977264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 9715312 - 9715445
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||| |||| ||||||||||||||||||||| |||  |||||| ||||||| | ||||||| || | ||| |||||| |||||||||  ||||||    
T  9715312 agagtcattgatgtaggtttggacggttacaaccaccaacacgttttcattgactgcactaatgacctatgactttttttaggctataaatagacttcca 9715411  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||||| |||||||||||| |||||||    
T  9715412 tcttcaacaaatagcttcattcttcacttcacct 9715445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 11719938 - 11720061
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||| |||||| |||||||| |||||||||  |||||| ||||||||| ||||||| || | ||| |||||| | |||||||  ||| ||    
T  11719938 agagccattaatgtaggtttgaacggttacgaccactaacacgttttcattgactgtactaatgacctaggacttattttaggccataaatagactttca 11720037  T
Q  198 acttcaacaaataccttcattctt 221  Q
     |||||||||||||||||||||||    
T  11720038 tcttcaacaaataccttcattctt 11720061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 8299204 - 8299313
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||   |||||||| |||  |||||  ||||||||||||||||| ||||  |||||||||    
T  8299204 aatccggaaagattcagagtcattaatttgggtttgaacggttacaacaaccaccaacacgtttttattgactgtattaatgacctaagaattgttttag 8299303  T
Q  180 actataaata 189  Q
     |||||||||    
T  8299304 gctataaata 8299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 15858880 - 15858831
Alignment:
Q  174 ttttagactataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  15858880 ttttaggctataaataggcttccatcttcaacaaataccttcattcttca 15858831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 2606076 - 2606119
Alignment:
Q  186 aataagcttccaacttcaacaaataccttcattcttcagttcac 229  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||    
T  2606076 aataggcttccatcttcaacaaataccttcattcttcacttcac 2606119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 25976975 - 25977014
Alignment:
Q  2 tccggaaaataaaatccgaaatgtacctttgttttacgga 41  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  25976975 tccggaaaataaaatccggaatgtacctttgttttccgga 25977014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 23252536 - 23252487
Alignment:
Q  174 ttttagactataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||||||||||||| ||| || ||| ||||||| |||||||||||||    
T  23252536 ttttagactataaataaacttgcatcttaaacaaattccttcattcttca 23252487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 33281239 - 33281091
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||||| |||| |||||||||| ||    
T  33281239 aatccagaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgattgtattaatgacctaagacttgttttaggct 33281140  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  33281139 ataaataggcttacatcttcaacaaataccttcattcttcacttcacct 33281091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 51538798 - 51538650
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||| ||||||| |||||||||||||||||||| | |||||||||| ||    
T  51538798 aatccggaaagattcagggccattaatgtgggtttggacagttgcaaccaccaacatgttttcattgactgtattaatgacttaggacttgttttaggct 51538699  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  51538698 ataaatatgcttccatcttcaacaaataccttcattcttcacttcacct 51538650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 52416917 - 52417066
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagac 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||| ||||||||||||||||| |||| |||||||||| |    
T  52416917 tccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaagacttgttttaggc 52417016  T
Q  182 tataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||| ||||||| |||||||||||||| |||||||||| |||||||    
T  52417017 tataaataggcttccatcttcaacaaataccctcattcttcacttcacct 52417066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 31093257 - 31093111
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | | || ||||||||||||||||| || | |||||||||| ||||    
T  31093257 tccggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgatctcattgactgtattaatgacctatgacttgttttaggctat 31093158  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  31093157 aaataggcttccatcttcaacaaataccttcattcttcacttcacct 31093111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 35158870 - 35158724
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||| || |||||||||||||| || | |||||||||| ||||    
T  35158870 tccggaaagattcagagccattattgtgggtttggacggttagaaccactaacacgttttcatttactgtattaatgacctaggacttgttttaggctat 35158771  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  35158770 aaataggcttccatcttcaacaaataccttcattcttcacttcacct 35158724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 16024026 - 16023878
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||| || || | |||||||||| ||    
T  16024026 aatccggaaagattcagagtcattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaataacctatgacttgttttaggct 16023927  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| |||||||  |||||||||||||||||||||||| |||||||    
T  16023926 ataaataggcttccatattcaacaaataccttcattcttcacttcacct 16023878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 28780760 - 28780900
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  28780760 aatctggaaagattcagagccattaatgtggttttgggcggttacaaccactaacacgttttcattgactgtattaatgacatatgacttgttttaggct 28780859  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  28780860 ataaataggcttccatcttcaacaaataccttcattcttca 28780900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 1602936 - 1602789
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||  ||||||||||||||||| || | |||||||||| ||    
T  1602936 aatccggaaagattcagagtcattaatgtggatttggacggttacaaccactaacacgtttta-ttgactgtattaatgacctaggacttgttttaggct 1602838  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  1602837 ataaataggctttcatcttcaacaaataccttcattcttcacttcacct 1602789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 40728179 - 40728039
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  40728179 aatccggaaagattcatagccattaatgtgggtatggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggct 40728080  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||| |||| || |||||||||||||||||||||||||    
T  40728079 ataaataggctttcatcttcaacaaataccttcattcttca 40728039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 45229223 - 45229083
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||| || | |||||||||| ||    
T  45229223 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcatggactgtattaatgacctaggacttgttttaggct 45229124  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||| | ||||| ||||||||||||  |||||||||||    
T  45229123 ataaataggattccatcttcaacaaatatattcattcttca 45229083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 49374470 - 49374323
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||| ||||||| || | |||||||||| ||    
T  49374470 aatccggaaagattcagagccattaatgtgggtttggacagttacaaccactaacacgttttcattgactgta-taatgacctatgacttgttttaggct 49374372  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| |||||||||| |||| ||||||||| |||||||    
T  49374371 ataaataggcttccatcttcaacaaaaacctccattcttcacttcacct 49374323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 168540 - 168673
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||| ||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||||| || | ||||||||||||||||||||  ||||||    
T  168540 agagccactaatgtgggtttggacgtttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttagactataaatagccttcca 168639  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  168640 tcttcaacaaataccttcattcttcacttcacct 168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 45462402 - 45462254
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||| ||||||||||||||||  || | |||||||||| ||||    
T  45462402 tccggaaagattcagagccattattgtgggtttggacggttacaaccactgacacgttttcattgactgtattaatgatctatgacttgttttaggctat 45462303  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
    |||||  ||| || |||||||||||| |||||||||||| |||||||||    
T  45462302 aaatagactttcatcttcaacaaatatcttcattcttcacttcacctat 45462254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 38551270 - 38551401
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||| ||||||| || | |||||||||| ||||||||| |||||||    
T  38551270 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacctaggacttgttttaggctataaataggcttcca 38551369  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  38551370 tcttcaacaaataccttcattcttcacttcac 38551401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 2013733 - 2013866
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||||||| |||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||||||  |||||||    
T  2013733 agagtcattaatgtggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaattggcttcca 2013832  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  2013833 tcttcaacaaataccttcattcttcacttcacct 2013866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 4189874 - 4190007
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||||||||||||||||||||||||||||||  |||||  |||||| |||||||||| || | |||||||||| ||||||||| |||||||    
T  4189874 agagtcattaatgtgggtttggacggttacaaccactaacacgtttttattgactatattaatgacctaggacttgttttaggctataaataggcttcca 4189973  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  4189974 tcttcaacaaataccttcattcttcacttcacct 4190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 30003764 - 30003616
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgtt--ttagact 182  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| || ||||  |||||| ||||||||||||||||| || | ||||||  |||| ||    
T  30003764 tccggaaagattcagagtcattattgtgggtttggacggttacaagcaataacacgttttcattgactgtattaatgacctaggacttgtttattaggct 30003665  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  30003664 ataaataggcttccatcttcaacaaataccttcattcttcacttcacct 30003616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 28310890 - 28311024
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggctt-gttttagactataaataagcttcc 196  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||| ||||| ||||||||||| |||| ||| |||||| |||||||||| ||||||    
T  28310890 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgaccgtattaatgacctaagactttgttttatactataaataggcttcc 28310989  T
Q  197 aacttcaacaaataccttcattcttcagttcacct 231  Q
    | ||||||||||||||||||||||||| |||||||    
T  28310990 atcttcaacaaataccttcattcttcatttcacct 28311024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 4048271 - 4048138
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||||| |||||||||||||||||||||||||  |||||| |||| ||||||||| || || | |||||||||| ||||||||| |||||||    
T  4048271 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgattgtattaataacctaggacttgttttaggctataaataggcttcca 4048172  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  4048171 tcttcaacaaataccttcattcttcacttcacct 4048138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 43841859 - 43842012
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   |||||||   |||||  ||||||||||||||||| || | ||||||||||    
T  43841859 aatccggaaagattcatagccattaatgtgggtttggacggttacaacaaccactaagacgttttaattgactgtattaatgacctatgacttgttttag 43841958  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
     |||||||||  ||| || ||||||||||||| ||||||||||| |||||||||    
T  43841959 gctataaatagactttcatcttcaacaaatacattcattcttcaattcacctat 43842012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 9036089 - 9036232
Alignment:
Q  90 aaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    |||||||||||| |||||||||||||||||||||||   ||||||||||||  |||||| |||||||||||||||||||| | ||| |||||| ||||||    
T  9036089 aaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggactt-ttttaggctataa 9036187  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| |||| || ||||||||||||| ||||||||||| |||||||    
T  9036188 ataggctttcatcttcaacaaatacattcattcttcatttcacct 9036232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 6963592 - 6963459
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||||||||||||||||||||| |||||||   ||||| |||||| || ||||||| || | ||| |||||| ||||||||| |||||||    
T  6963592 agagccattaatgtgggtttggacggttacaatcactaacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttcca 6963493  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  6963492 tcttcaacaaataccttcattcttcacttcacct 6963459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 38218247 - 38218398
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||| || ||||||| ||||||||||||||||| ||||||   ||||||||  |||||| ||||||||||||||||| ||   ||||||||||    
T  38218247 aatccggaaaggtttagagccactaatgtgggtttggacgattacaacaaccactaacacgttttcattgactgtattaatgacctagaacttgttttag 38218346  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| ||||||||||||||| ||||||||| |||||||    
T  38218347 cctataaataggcttccatcttcaacaaatacctacattcttcacttcacct 38218398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 45924736 - 45924615
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||||||| | ||| |    
T  45924736 agagccattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataaataggtttcaa 45924637  T
Q  198 acttcaacaaataccttcattc 219  Q
     |||||||||||||||||||||    
T  45924636 tcttcaacaaataccttcattc 45924615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 55136814 - 55136670
Alignment:
Q  90 aaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    ||||||||| | |||||||||||||||||||||||||||||   |||||||  ||| || |||| |||||||||||| || | |||||||||| ||||||    
T  55136814 aaagattcaaatccattaatgtgggtttggacggttacaacaaccactaacacgttatcattgattgtattaatgacctatgacttgttttaggctataa 55136715  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| |||| || ||||||||||||||||||||||||| |||||||    
T  55136714 ataggctttcatcttcaacaaataccttcattcttcacttcacct 55136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 15542841 - 15542973
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||| ||||||||||||||||||||||| ||| ||||||  |||||| |||||| || ||||||| || | |||||||||| ||||||||| |||||||    
T  15542841 agagcaattaatgtgggtttggacggttaaaac-actaacacgttttcattgactatagtaatgacctaggacttgttttaggctataaataggcttcca 15542939  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  15542940 tcttcaacaaataccttcattcttcacttcacct 15542973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 56463631 - 56463767
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||| || |||||||||||||||||||||||||||   ||||||||||||   ||||| |||||||||||||||||    | ||||||||||    
T  56463631 aatccggaaagactcggagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgaccgtggacttgttttag 56463730  T
Q  180 actataaataagcttccaacttcaacaaataccttca 216  Q
     ||||||||| ||||||| ||||||||||||||||||    
T  56463731 gctataaataggcttccatcttcaacaaataccttca 56463767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 16452068 - 16451935
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||||  ||||| ||||||||||||||||||  |||||| ||||||||| ||||||  || | |||||||||| ||||||||| |||||||    
T  16452068 agagtcattaatgtatgtttgaacggttacaaccactaacacgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 16451969  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||| || |||||||||||||||| |||||||    
T  16451968 tcttcagcagataccttcattcttcacttcacct 16451935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 35319896 - 35320029
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||||| ||||||||||||||||| ||||||  |||||| || ||| || ||||||| || | |||||||||  ||||||||| |||||||    
T  35319896 agagtcattaatgtgagtttggacggttacaactactaacacgttttcattaactatagtaatgacctatgacttgttttaagctataaataggcttcca 35319995  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||| |||||||| || |||||||    
T  35319996 tcttcaacaaatactttcattctccacttcacct 35320029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20516734 - 20516682
Alignment:
Q  171 ttgttttagactataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||||| ||||||||| |||| || ||||||||||| |||||||||||||    
T  20516734 ttgttttaggctataaataggcttgcatcttcaacaaattccttcattcttca 20516682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 39807350 - 39807410
Alignment:
Q  171 ttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||  ||||||||| |||| || ||||||||||| ||||||||||||| |||||||    
T  39807350 ttgttttacgctataaataggctttcatcttcaacaaattccttcattcttcacttcacct 39807410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 39318582 - 39318728
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||    
T  39318582 tccggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctat 39318681  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| ||||||| |||||||||||||||||||| |||| |||||||    
T  39318682 aaataggcttccatcttcaacaaataccttcattattcacttcacct 39318728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 8239974 - 8240120
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| || ||||||||||| || || | |||||||||| ||||    
T  8239974 tccggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattaactgtattaataacataggacttgttttaggctat 8240073  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  8240074 aaataggcttccatcttcaacaaataccttcattcttcacttcacct 8240120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 40105236 - 40105382
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||    
T  40105236 tccggaaagattcagagtcattattgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctat 40105335  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| |||| || ||||||||||||||||||||||||| |||||||    
T  40105336 aaataggctttcatcttcaacaaataccttcattcttcaattcacct 40105382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 35684002 - 35684147
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| |||||||| ||||||||  |   |||||||||| ||||    
T  35684002 tccggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgttttaatgacccagtacttgttttaggctat 35684101  T
Q  185 aaataagcttccaacttcaacaaataccttcattcttcagttcacc 230  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  35684102 aaataggcttccatcttcaacaaataccttcattcttcacttcacc 35684147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 11076377 - 11076233
Alignment:
Q  87 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||  ||||||||||||||||| || | |||||||||||||||||    
T  11076377 cggaaagattcagagtcattattgtgggtttggacggttacaaccactaacacgtttttattgactgtattaatgacctaggacttgttttagactataa 11076278  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||  ||||||  ||||||||||||||| |||||||| |||||||    
T  11076277 atagacttccattttcaacaaataccttaattcttcacttcacct 11076233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 6347433 - 6347300
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| || |||||| ||||||| || | |||||||||| ||||||| | |||||||    
T  6347433 agagccattaatgtgggtttggacggttacaaccactaacacgttttcatttactgtactaatgacctaggacttgttttaggctataaacatgcttcca 6347334  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  6347333 tcttcaacaaataccttcattcttcatttcacct 6347300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 37098471 - 37098338
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||  ||||||||||||||||| |  | |||||||||| |||||||||||||| ||    
T  37098471 agagccattaatgtgggtttagacggttacaaccactaacacgtttttattgactgtattaatgacatgggacttgttttaggctataaataagctttca 37098372  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  37098371 tcttcaacaaataccttcattcttcacttcacct 37098338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 43098545 - 43098678
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||||| || | |||||||||| ||||||||| |||||||    
T  43098545 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactataataatgacctaggacttgttttaggctataaataggcttcca 43098644  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||| ||||||||||| |||||||    
T  43098645 tcttcaacaaatacattcattcttcacttcacct 43098678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 39260274 - 39260425
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccac---taacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||   ||||  |||||  ||||||||||||||||| || | ||||||||||    
T  39260274 aatccggaaagattcagagtcattaatgtgggtttggacggttacaacaaccattaacacgtttttattgactgtattaatgacctaggacttgttttag 39260373  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||| | ||||||||||||| ||||||||||| |||||||    
T  39260374 gctataaataggcttctatcttcaacaaatacattcattcttcacttcacct 39260425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 20091998 - 20091867
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||| ||||||||| |||||||||||||||  |||||| ||||| ||| ||||||| || | |||||||||| ||||| ||| |||||||    
T  20091998 agagccattaatgtcggtttggacagttacaaccactaacacgttttcattgaccgtagtaatgacataggacttgttttaggctatatataggcttcca 20091899  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  20091898 tcttcaacaaataccttcattcttcacttcac 20091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 23144107 - 23144241
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaa-tgacttaaggcttgttttagactataaataagcttcc 196  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||| ||||||||| ||| |||| || | ||||||||||  |||||||| ||||||    
T  23144107 agagtcattaatgtaggtttggacgattacaaccactaacatgttttcattgactgtagtaaatgacctaggacttgttttaggttataaataggcttcc 23144206  T
Q  197 aacttcaacaaataccttcattcttcagttcacct 231  Q
    | ||||||||||||||||||||||||| |||||||    
T  23144207 atcttcaacaaataccttcattcttcacttcacct 23144241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 627512 - 627387
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||| ||||| | |||||||||||||||||||||||  |||||| ||||||||| ||||||  |||| |||||||||| ||||||||| ||||| |    
T  627512 agagccatcaatgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 627413  T
Q  198 acttcaacaaataccttcattcttca 223  Q
     |||||||||||||||||||||||||    
T  627412 tcttcaacaaataccttcattcttca 627387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 32337948 - 32337815
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||| ||||| ||||||||||||||||| |||||||  |||||| |||| |||| ||||||| || | |||| ||||| ||||||||| |||||||    
T  32337948 agagccatcaatgtaggtttggacggttacaatcactaacacgttttcattgattgtactaatgacctaggacttggtttaggctataaataggcttcca 32337849  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  32337848 tcttcaacaaataccttcattcttcacttcacct 32337815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 586411 - 586536
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||| | ||| | |||||||||||||||||||||||  |||||| ||||||||| ||||||  |||| |||||||||| ||||||||| ||||| |    
T  586411 agagccatcagtgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 586510  T
Q  198 acttcaacaaataccttcattcttca 223  Q
     |||||||||||||||||||||||||    
T  586511 tcttcaacaaataccttcattcttca 586536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 31701047 - 31701177
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||| ||||||||||||||   |||||| ||||| ||||  |||||| ||||||||| ||||||| || | |||||||||| ||||||||| |||||||    
T  31701047 agagctattaatgtgggttt---cggttataaccaataacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggcttcca 31701143  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  31701144 tcttcaacaaataccttcattcttcacttcacct 31701177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 32947175 - 32947084
Alignment:
Q  140 gttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||| ||||||||||||||||| || | |||||||||| |||||| || ||||| | ||||||||||||||||||||||||| |||||||    
T  32947175 gttttcattgactgtattaatgacctaggacttgttttaggctataagtaggcttctatcttcaacaaataccttcattcttcacttcacct 32947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 42131885 - 42131932
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac 130  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42131885 aatccggaaagattcagagccattaatatgggtttggacggttacaac 42131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 13546259 - 13546298
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaac 137  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13546259 agagccattaatgtgtgtttggacggttacaaccactaac 13546298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 13678214 - 13678175
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaac 137  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13678214 agagccattaatgtgtgtttggacggttacaaccactaac 13678175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 42131969 - 42132001
Alignment:
Q  199 cttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||||||||||||||||||| |||||||    
T  42131969 cttcaacaaataccttcattcttcacttcacct 42132001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 47647072 - 47646921
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  47647072 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 47646973  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  47646972 gctataaataggcttccatcttcaacaaataccttcattcttcacttcacct 47646921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 26502173 - 26502324
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  26502173 aatccggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 26502272  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||| |||||||    
T  26502273 actataaataggcttccatcttcaacaaatacctacattcttcacttcacct 26502324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 149479 - 149331
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  149479 aatccggaaagattcagagtcattaacgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggct 149380  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| |||||||    
T  149379 ataaataggcttccatcttcaacaaatacttacattcttcacttcacct 149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 47013701 - 47013848
Alignment:
Q  84 atccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagacta 183  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||| ||||||||||| || | |||||||||| |||    
T  47013701 atccgaaaagattcagagccattaatgtgggtttggatggttacaaccactaacacgttttcattgaccgtattaatgacctaggacttgttttaggcta 47013800  T
Q  184 taaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||| | ||||| ||||||||||||||||||||||||| |||||||    
T  47013801 taaataggtttccatcttcaacaaataccttcattcttcacttcacct 47013848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 10509203 - 10509354
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||| ||||||||||||||||| || | ||| ||||||    
T  10509203 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttag 10509302  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||| | ||||||||||||||||||||||||| |||||||    
T  10509303 gctataaataggcttctatcttcaacaaataccttcattcttcacttcacct 10509354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 32529937 - 32529804
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||| || | |||||||||| ||||||||| |||||||    
T  32529937 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattaactgtattaatgacctaggacttgttttaggctataaataggcttcca 32529838  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  32529837 tcttcaacaaataccttcattcttcacttcacct 32529804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 36402692 - 36402843
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  36402692 aatccggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 36402791  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
      |||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  36402792 gttataaataggcttccatcttcaacaaataccttcattcttcacttcacct 36402843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 39586726 - 39586576
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||| ||||||||||||||||| || |  ||||||||  ||    
T  39586726 aatccggaaagattcagagccattaatgtgggtttggatggttacaaccactaacacggtttcattgactgtattaatgacctaggatttgttttaagct 39586627  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
    ||||||| |||||||  |||||||||||| ||||||||||| |||||||||    
T  39586626 ataaataggcttccattttcaacaaatactttcattcttcaattcacctat 39586576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 6936605 - 6936472
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||| ||||||||| |||||||||||||||||  |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||    
T  6936605 agagccattaatatgggtttgggcggttacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggctataaataggcttcca 6936506  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||| ||||||||||| |||||||    
T  6936505 tcttcaacaaatacattcattcttcacttcacct 6936472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 227770 - 227634
Alignment:
Q  95 ttcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagctt 194  Q
    |||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| |||||||||  |||    
T  227770 ttcagagccattgatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagactt 227671  T
Q  195 ccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| ||| ||||||||||||||||||||| |||||||    
T  227670 ccatctttaacaaataccttcattcttcacttcacct 227634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 40937366 - 40937222
Alignment:
Q  87 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || |  ||||||||| ||||||    
T  40937366 cggaaagattcagagtctttaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataa 40937267  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| ||||||| ||||||||||||| |||||| |||| |||||||    
T  40937266 ataggcttccatcttcaacaaatactttcatttttcacttcacct 40937222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 41193717 - 41193850
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||||| || | |||||||||| ||||||||| |||||||    
T  41193717 agagctattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaatatgcttcca 41193816  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||||||||||||||| || |||||||    
T  41193817 tcttcaacaaataccttcattctccacttcacct 41193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 39353435 - 39353310
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || |  ||||||||| ||||||||| |||||||    
T  39353435 agagtcattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataaataggcttcca 39353336  T
Q  198 acttcaacaaataccttcattcttca 223  Q
     |||||||| |||| |||||||||||    
T  39353335 tcttcaacagatacattcattcttca 39353310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 49166110 - 49166240
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||||| |||| |||||||||||||||||||| ||||||| ||||||||| ||||||  || | |||||||||| ||||||||| |||||||    
T  49166110 agagtcattaatgtaggttaggacggttacaaccactaacatgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 49166209  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     |||| |||||||||||||||||||| |||||    
T  49166210 tcttc-acaaataccttcattcttcacttcac 49166240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 31765207 - 31765335
Alignment:
Q  103 cattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttc 202  Q
    ||||||||| |||||| ||||||||||||||||||  |||||  ||||||| | ||||||| || | ||||||||||  |||||||| ||||||| ||||    
T  31765207 cattaatgtaggtttgaacggttacaaccactaacacgtttttattgactgcactaatgacctaggacttgttttaggttataaataggcttccatcttc 31765306  T
Q  203 aacaaataccttcattcttcagttcacct 231  Q
    ||||||||||||||||||||| |||||||    
T  31765307 aacaaataccttcattcttcacttcacct 31765335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 41174905 - 41174816
Alignment:
Q  140 gttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcac 229  Q
    |||||| ||||||||||||||||| || | |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  41174905 gttttcattgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcac 41174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 41182051 - 41182006
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaac 130  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  41182051 tccggaaagattcagagccattaatgtgggtttggatggttacaac 41182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 33843582 - 33843521
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||| ||||||||| | ||||| ||||||||||| ||||||||||||| |||||||    
T  33843582 cttgttttaggctataaataggtttccatcttcaacaaattccttcattcttcacttcacct 33843521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 42899283 - 42899222
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||| ||||||||| |||| ||  |||||||||| ||||||||||||| |||||||    
T  42899283 cttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcacct 42899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 51329000 - 51329061
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||| ||||||||| |||| ||  |||||||||| ||||||||||||| |||||||    
T  51329000 cttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcacttcacct 51329061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 32530081 - 32530017
Alignment:
Q  4 cggaaaataaaatccgaaatgtacctttgttttacggattaaagtgataattgtgaacgagggaa 68  Q
    ||||| ||||||||||||||| || | |||||| |||||||| | |||||| |||||||||||||    
T  32530081 cggaatataaaatccgaaatgcacatgtgttttccggattaatgcgataatggtgaacgagggaa 32530017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 53394016 - 53393958
Alignment:
Q  165 taaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    |||| |||||||||| ||||||||| |||| ||  |||||||||| |||||||||||||    
T  53394016 taagacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttca 53393958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 25214606 - 25214666
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacc 230  Q
    |||||||||| |||||||||  ||| || ||| ||||||| ||||||||||||| ||||||    
T  25214606 cttgttttaggctataaatagacttacatctttaacaaattccttcattcttcaattcacc 25214666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 44760245 - 44760105
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  44760245 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggct 44760146  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||||||||||| |||||| | ||||||||||| ||||    
T  44760145 ataaataagcttccatcttcaagatataccttcattattca 44760105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 6404268 - 6404128
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||| ||||||||||| || | |||||||||| ||    
T  6404268 aatcgggaaagatttagagccattaatgcgggtttggacggttacaaccactaacacgttttcgttgaccgtattaatgacctaggacttgttttaggct 6404169  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  6404168 ataaataggcttccatcttcaacaaataccttcattcttca 6404128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 15911931 - 15911780
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||   ||||| ||||||||||||||||| || | ||||||||||    
T  15911931 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgacctaggacttgttttag 15911832  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| |||||||||||||||| |||||||| |||||||    
T  15911831 gctataaataggcttccatcttcaacaaataccttgattcttcacttcacct 15911780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 13278831 - 13278698
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||||  | | |||||||||| ||||||||| |||||||    
T  13278831 agagccattaatgtggggttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaggacttgttttaggctataaataggcttcca 13278732  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  13278731 tcttcaacaaataccttcattcttcacttcacct 13278698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 17309112 - 17308962
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtta---caaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||  |||||| ||||||||||||||||| || | |||||||| |    
T  17309112 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttcg 17309013  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| |||| |||||||||||||||||||| |||||||    
T  17309012 gctataaataggcttccatcttc-acaaataccttcattcttcacttcacct 17308962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 30490662 - 30490805
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||| ||||||||||||||||| || | ||||||||||    
T  30490662 aatccagaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttag 30490761  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttca 223  Q
     | ||||||| |||| || ||||||||||||||| |||||||||    
T  30490762 gccataaataggctttcatcttcaacaaatacctacattcttca 30490805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 38703569 - 38703719
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||  |||||| ||||||||||||||||| || | ||| ||||||    
T  38703569 aatccggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttag 38703668  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||  ||||||| |||||||||||||||| |||||||| |||||||    
T  38703669 gctataaat-ggcttccatcttcaacaaatacctttattcttcacttcacct 38703719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 17137689 - 17137842
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagac 181  Q
    |||||||| ||| ||||||||||||||||||||||||||||   ||||||||||||  |||||| ||||||||||||||||| || | |||||||||| |    
T  17137689 tccggaaacatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggc 17137788  T
Q  182 tataaataa----gcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||    ||||| | ||||||||||||||||||||||||| |||||||    
T  17137789 tataaataaacaggcttctatcttcaacaaataccttcattcttcacttcacct 17137842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 45117230 - 45117075
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||| |||||| |||||||||| |||| |||||||||| ||    
T  45117230 aatccagaaagattcagagccgttaatgtggatttggacggttacaaccactaacacgttttcattgactctattaatgacctaagacttgttttaggct 45117131  T
Q  183 ataaata-------agcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||       | |||||| ||||||||||||| ||||||||||| |||||||    
T  45117130 ataaataggcttccatcttccatcttcaacaaatactttcattcttcacttcacct 45117075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 7942742 - 7942875
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||| ||| || | |||||||||  ||||||| |  ||||||    
T  7942742 agagccattaatgtaggtttggacggttacaaccactaacatgttttcattgactgtagtaaggacctaggacttgttttatgctataaacagacttcca 7942841  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||||||||||||| |||| |||||||    
T  7942842 tcttcaacaaataccttcattgttcacttcacct 7942875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 31994077 - 31994210
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||| ||||||| || | |||||||||| ||||||||| | |||||    
T  31994077 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggtttcca 31994176  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
      ||||||||||| |||||||| ||| |||||||    
T  31994177 tattcaacaaatatcttcattcatcacttcacct 31994210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 1209930 - 1210062
Alignment:
Q  98 agagccattaa-tgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcc 196  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||| |||||| |||||||||| || | |||||||||  ||||||||| ||||||    
T  1209930 agagccattaaatgtgggtttggacggttacaaccactaacacgttttcattgactttattaatgacctaggacttgttttaagctataaataggcttcc 1210029  T
Q  197 aacttcaacaaataccttcattcttcagttcac 229  Q
    | |||| |||||||||| ||||||||| |||||    
T  1210030 atcttcgacaaatacctgcattcttcacttcac 1210062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 18137722 - 18137596
Alignment:
Q  102 ccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaactt 201  Q
    |||||||||| |||| ||||||||||||||||||||  |||||| |||| |||| ||||||| || | ||| |||||| ||||||||| ||||  | |||    
T  18137722 ccattaatgtaggttgggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttattttaggctataaataggcttttatctt 18137623  T
Q  202 caacaaataccttcattcttcagttca 228  Q
    |||||||||||||||||||||| ||||    
T  18137622 caacaaataccttcattcttcacttca 18137596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 38207567 - 38207489
Alignment:
Q  153 gtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||||| || | |||||||||| ||||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  38207567 gtattaatgacctaggacttgttttaggctataaatatgcttacatcttcaacaaataccttcattcttcacttcacct 38207489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 38208487 - 38208410
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtatt 157  Q
    |||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||  |||||| ||||| |||||    
T  38208487 aatctggaaagattcagagccattaatgtgggtttggacggttgcaacaaccactaacacgttttcattgaccgtatt 38208410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 1114803 - 1114722
Alignment:
Q  140 gttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattctt 221  Q
    |||||| |||||| || ||||||| || | |||||||||  ||||||||| |||| || |||||||||||||||||||||||    
T  1114803 gttttcattgactatactaatgacctaggacttgttttaagctataaataggctttcatcttcaacaaataccttcattctt 1114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 21485330 - 21485391
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||| |||||||||||||| ||  |||||||||| | ||||||||||| |||||||    
T  21485330 cttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcacct 21485391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 37127964 - 37128027
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
    |||||||||| |||||||||||||| ||  || ||||||| | ||||||||||| |||||||||    
T  37127964 cttgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcacctat 37128027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 1115236 - 1115204
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaac 130  Q
    |||||||||||||| ||||||||||||||||||    
T  1115236 agagccattaatgtaggtttggacggttacaac 1115204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7942582 - 7942614
Alignment:
Q  1 ttccggaaaataaaatccgaaatgtacctttgt 33  Q
    ||||||||||||||||||| |||||||||||||    
T  7942582 ttccggaaaataaaatccggaatgtacctttgt 7942614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31993916 - 31993948
Alignment:
Q  1 ttccggaaaataaaatccgaaatgtacctttgt 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31993916 ttccggaaaataaaatccggaatgtacctttgt 31993948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 33945993 - 33945933
Alignment:
Q  170 cttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacc 230  Q
    |||||||||| ||||| ||| | || || ||||||||||| ||||||||||||| ||||||    
T  33945993 cttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcacc 33945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 37952453 - 37952305
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  37952453 aatccggaaagattcagagtcattaatgtgggtttggaccgttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggct 37952354  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||| | ||||||| ||||||||||||||||||||||||| |||||||    
T  37952353 ataaaaaggcttccatcttcaacaaataccttcattcttcacttcacct 37952305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 29961546 - 29961404
Alignment:
Q  87 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||| ||||||||||||||||| ||| |||||| ||||||    
T  29961546 cggaaagattcagagccattaatgtgggtttgaacggttacaaccactaacacgttttcattgattgtattaatgacttaagacttattttaggctataa 29961447  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcac 229  Q
    |||  |||||| ||||||||||||||||||||||||| |||||    
T  29961446 atagacttccatcttcaacaaataccttcattcttcacttcac 29961404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 44496638 - 44496488
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  44496638 aatccggaaagattcaaagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggct 44496539  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacctat 233  Q
    ||||||| |||| || ||||||||||||| ||||||||||| | |||||||    
T  44496538 ataaataggctttcatcttcaacaaatactttcattcttcactccacctat 44496488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 41086537 - 41086406
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||||||||||||| |||||||    
T  41086537 agagccattaatgtgggtttggaaggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagactataaataggcttcca 41086438  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  41086437 tcttcaacaaataccttcattcttcacttcac 41086406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 41091305 - 41091174
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||||||| |||||||    
T  41091305 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 41091206  T
Q  198 acttcaacaaataccttcattcttcagttcac 229  Q
     ||||||||||||||||||||||||| |||||    
T  41091205 tcttcaacaaataccttcattcttcacttcac 41091174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 14587322 - 14587476
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||  |||||| |||||||||||||||||||| | ||||||||||    
T  14587322 aatccggaaagattcagagccatttatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttag 14587421  T
Q  180 actataaata---agcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||    ||||||| ||||||||||||||||||||||||| |||||||    
T  14587422 gctataaataggcggcttccatcttcaacaaataccttcattcttcacttcacct 14587476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 11952421 - 11952554
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||  ||| ||| |||||| ||||||||| |||||||    
T  11952421 agagccattaatgtgagtttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaagacttattttaggctataaataggcttcca 11952520  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  11952521 tcttcaacaaataccttcattcttcacttcacct 11952554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 42882578 - 42882715
Alignment:
Q  86 ccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactata 185  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||   ||||| ||||||||||||||||| || | |||||||||| |||||    
T  42882578 ccggaaagattcagagccattattgtgggtttggatggttacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggctata 42882677  T
Q  186 aataagcttccaacttcaacaaataccttcattcttca 223  Q
    |||| ||||||| |||||||||||| ||||||||||||    
T  42882678 aataggcttccatcttcaacaaatatcttcattcttca 42882715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 50261992 - 50262125
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||||||||| |||||||    
T  50261992 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 50262091  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  50262092 tcttcaacaaataccttcattcttcacttcacct 50262125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 41900288 - 41900413
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| || | |||||||||| ||||||||| |||||||    
T  41900288 agagccattaatgtgggtttggacggttacaaccactaacacattttcattgactgtattaatgacctatgacttgttttaggctataaataggcttcca 41900387  T
Q  198 acttcaacaaataccttcattcttca 223  Q
     |||||| ||||||||||||||||||    
T  41900388 tcttcaataaataccttcattcttca 41900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 49851846 - 49851713
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||| || | |||||||||| ||||||||| |||| ||    
T  49851846 agagccatcaatgtaggtttggacggttacaaccactaacatgttttcattgactgtactaatgacctaggacttgttttaggctataaataggctttca 49851747  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  49851746 tcttcaacaaataccttcattcttcacttcacct 49851713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 33801519 - 33801368
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttaca---accactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||   |||||||||  |||||| ||||||||| |||||||||| | ||||||||||    
T  33801519 aatctggaaagattcagagtcattaatgtgggtttggacgattacagcaaccactaacacgttttcattgactgtaataatgacttaggacttgttttag 33801420  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| |||||| |||||||| ||||||||| |||||||    
T  33801419 gctataaataggcttccatcttcaaaaaatacctacattcttcacttcacct 33801368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 38860814 - 38860681
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||| |||| |||||||||||  || | |||||||||| ||||||||| |||| ||    
T  38860814 agagccattaatgtgggtttggacggttactaccactaacacgttttcattgaatgtattaatgatctatgacttgttttaggctataaataggctttca 38860715  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  38860714 tcttcaacaaataccttcattcttcacttcacct 38860681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 52632362 - 52632493
Alignment:
Q  100 agccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaac 199  Q
    |||||||||||||||||| |||||||||||||||||||  |||||| |||| |||||||||||| || | |||||||||| ||||||||| ||||||| |    
T  52632362 agccattaatgtgggtttagacggttacaaccactaacacgttttcattgattgtattaatgacctaggacttgttttaggctataaataggcttccatc 52632461  T
Q  200 ttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||||  |||||||||||| |||||||    
T  52632462 ttcaacaaatgtcttcattcttcacttcacct 52632493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 12528583 - 12528448
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| ||||||| ||  ||| ||||||||||||||| |||  |||||| ||||||||||||||||| || | |||||||||| ||||||||| |||||||    
T  12528583 agagtcattaatatgaatttcgacggttacaaccaccaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 12528484  T
Q  198 acttcaacaaataccttcattcttcagttcacctat 233  Q
     ||||||||||||||||||||||||| |||||||||    
T  12528483 tcttcaacaaataccttcattcttcacttcacctat 12528448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 23984039 - 23984169
Alignment:
Q  98 agagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttcca 197  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   ||||| || | |||||||||| ||||||||| | |||||    
T  23984039 agagtcattaatgagggtttggacggttacaaccactaacatgttttcattgactgta---atgacctaggacttgttttaggctataaataggtttcca 23984135  T
Q  198 acttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||||||||||||||||||| |||||||    
T  23984136 tcttcaacaaataccttcattcttcacttcacct 23984169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 12700521 - 12700664
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccac---taacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||   ||||   ||||| ||||||||||||||||  || | ||||||||||    
T  12700521 aatctggaaagattcagagccattaatgtgcgtttggacagttacaaccaccactaacacattttcattgactgtattaatgatctaggacttgttttag 12700620  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttca 223  Q
     ||||||||| ||||||| |||||||||||| ||||||||||||    
T  12700621 gctataaataggcttccatcttcaacaaatatcttcattcttca 12700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 3517560 - 3517708
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggtt---acaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||  |||||| |||||||   ||||||| || |  |||||||||    
T  3517560 aatccggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactg---taatgacctaggagttgttttag 3517656  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||  |||  | ||||||||||||||||||||||||| |||||||    
T  3517657 gctataaatagacttttatcttcaacaaataccttcattcttcacttcacct 3517708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 41723676 - 41723533
Alignment:
Q  90 aaagattcagagccattaatgtgggtttggacggt---tacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 186  Q
    ||||||||||||||||||||||||||||||||| |    |||||||| |||  |||||| |||||| |||||||||| | || |||||||||| ||||||    
T  41723676 aaagattcagagccattaatgtgggtttggacgataacaacaaccaccaacacgttttcattgactatattaatgacct-agacttgttttaggctataa 41723578  T
Q  187 ataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||| |||| || ||||||||||||||||||||||||| |||||||    
T  41723577 ataggctttcatcttcaacaaataccttcattcttcacttcacct 41723533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 27216931 - 27216803
Alignment:
Q  103 cattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttc 202  Q
    |||||||||  ||||||||||||||||||||||||  |||||| |||| |||| ||||||| || | |||||||||| ||||||||| |||| || ||||    
T  27216931 cattaatgtatgtttggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttgttttaggctataaataggctttcatcttc 27216832  T
Q  203 aacaaataccttcattcttcagttcacct 231  Q
    || |||||| ||||||||||| |||||||    
T  27216831 aaaaaatactttcattcttcacttcacct 27216803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 44757581 - 44757664
Alignment:
Q  148 tgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||||||||||||||| || | |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacct 44757664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 22858851 - 22858800
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccact 134  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22858851 aatccggaaagattcagagccattaatgtgggttttgacggttacaaccact 22858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 48964913 - 48964986
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtat 156  Q
    |||||| |||||||||||| |||||||||||||||||||||||| || |||||||  |||||| ||||||||||    
T  48964913 aatccgaaaagattcagagtcattaatgtgggtttggacggttagaatcactaacacgttttcattgactgtat 48964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 48964984 - 48965025
Alignment:
Q  182 tataaataagcttccaacttcaacaaataccttcattcttca 223  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  48964984 tataaataggcttccatcttcaacaaatacgttcattcttca 48965025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 9304938 - 9305086
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||| ||||||||||||||||| || | |||||||||| ||    
T  9304938 aatccggaaagattcagagccattattgtgggttttgacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggct 9305037  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||  | ||| ||||||||||||||||| ||| |||||||    
T  9305038 ataaataggcttttaccttaaacaaataccttcattcatcacttcacct 9305086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 31271502 - 31271354
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagact 182  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||| || |||||||||||||| || | |||||||||| ||    
T  31271502 aatcccgaaagattcagagccattaatgtgggtttggacgattacaaccacttacacgttttcattaactgtattaatgacctatgacttgttttaggct 31271403  T
Q  183 ataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||| ||||||| ||||||||||||| |||||| |||| |||||||    
T  31271402 ataaataggcttccatcttcaacaaatactttcatttttcacttcacct 31271354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 31318671 - 31318539
Alignment:
Q  99 gagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaa 198  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||||| || | |||||||||| ||||||||| |||| ||     
T  31318671 gagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggctttcat 31318572  T
Q  199 cttcaacaaataccttcattcttcagttcacct 231  Q
    ||||||||||||||||||||||||| |||||||    
T  31318571 cttcaacaaataccttcattcttcacttcacct 31318539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 31722855 - 31723001
Alignment:
Q  85 tccggaaagattcagagccattaatgtgggtttggacggttacaa---ccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagac 181  Q
    |||||||||||||||||||||||||||||||||||| ||||||||   ||||||||  |||||| ||||||||||||||||| || | |||||||||| |    
T  31722855 tccggaaagattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggc 31722954  T
Q  182 tataaataagcttccaacttcaacaaataccttcattcttcagttca 228  Q
    |||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  31722955 tataaataggcttccatcttcaacaaagaccttcattcttcacttca 31723001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 439187 - 439036
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||   |||||||  ||||||||||||| || ||||||| || | ||||||||||    
T  439187 aatccgaaaagattcaaagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcgttgactatactaatgacctaggacttgttttag 439088  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     |||||||||  |||||| ||||||||||||||||||||||||| |||||||    
T  439087 gctataaatagacttccatcttcaacaaataccttcattcttcacttcacct 439036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 16395471 - 16395320
Alignment:
Q  83 aatccggaaagattcagagccattaatgtgggtttggacggttacaac---cactaacttgttttcgttgactgtattaatgacttaaggcttgttttag 179  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||||   |||||||  |||||| |||||| |||||||||| || | ||||||||||    
T  16395471 aatccggaaatattcaaagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactatattaatgacataggacttgttttag 16395372  T
Q  180 actataaataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
     ||||||||| ||||||| | ||||||||||| ||||||||||| |||||||    
T  16395371 gctataaataggcttccatcgtcaacaaatactttcattcttcacttcacct 16395320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 303904 - 303759
Alignment:
Q  89 gaaagattcagagccattaatgtgggtttggacggtta---caaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactata 185  Q
    |||| |||||||| |||||||||  |||||||||||||   ||||||| |||  |||||| |||| |||||||||||| || | |||||||||| |||||    
T  303904 gaaacattcagagtcattaatgtaagtttggacggttataacaaccaccaacacgttttcattgattgtattaatgacctaggacttgttttaggctata 303805  T
Q  186 aataagcttccaacttcaacaaataccttcattcttcagttcacct 231  Q
    |||| |||||||  |||||||||||||||||||||||| |||||||    
T  303804 aataggcttccattttcaacaaataccttcattcttcacttcacct 303759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 20818653 - 20818537
Alignment:
Q  115 tttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaatacctt 214  Q
    ||||||||||||  ||||| |||  |||||| |||| |||| | ||||| || | ||| ||||||||||||||||  |||||| ||||||||||| ||||    
T  20818653 tttggacggttagcaccacaaacacgttttcattgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattcctt 20818554  T
Q  215 cattcttcagttcacct 231  Q
    ||||||| | |||||||    
T  20818553 cattctttacttcacct 20818537  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 19071 - 19152
Alignment:
Q  147 ttgactgtattaatgacttaaggcttgttttagactataaataagcttccaacttcaacaaataccttcattcttcagttca 228  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||| |||  || ||||||||||| ||||||||||||| ||||    
T  19071 ttgactgtacttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttca 19152  T

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