View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_high_6 (Length: 640)

Name: NF12029_high_6
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_high_6
NF12029_high_6
[»] chr1 (5 HSPs)
chr1 (15-622)||(17407735-17408339)
chr1 (167-282)||(29857465-29857580)
chr1 (558-607)||(29857847-29857896)
chr1 (339-383)||(29857640-29857684)
chr1 (168-226)||(888402-888460)
[»] chr7 (6 HSPs)
chr7 (182-241)||(39733423-39733482)
chr7 (336-383)||(39733577-39733624)
chr7 (336-383)||(39839334-39839381)
chr7 (182-241)||(39839476-39839535)
chr7 (531-607)||(39839134-39839210)
chr7 (531-607)||(31290047-31290123)
[»] chr3 (1 HSPs)
chr3 (168-226)||(50667862-50667920)


Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 15 - 622
Target Start/End: Complemental strand, 17408339 - 17407735
Alignment:
Q  15 atgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacgtaaaaatgcaaagtatgaatcaagattaacataattaatcaaagt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||   ||||||||||    
T  17408339 atgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacataaaaatgcaaacaatgaatcaagattaacat---taatcaaagt 17408243  T
Q  115 aattaatttttgtttaagtactcaccgagcttcgaacgaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttcc 214  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408242 aattaatttttgtttaagtactcaccgaacttcgaacaaccattgatggatttgcattatggttacaaagatcaagagaaacttccatgccagaatttcc 17408143  T
Q  215 acatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408142 acatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaat 17408043  T
Q  315 tccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaacttcaacaactttatcactttttatcctattgctct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17408042 tccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaacttcaacaactttatcactttttatcctattgctct 17407943  T
Q  415 taatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatatgattcgaggta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17407942 taatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttttcgcatatgattcgaggta 17407843  T
Q  515 acttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagtttaagacga 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  17407842 acttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttaggaagatgaagtttaagacga 17407743  T
Q  615 tcgtaggt 622  Q
    ||||||||    
T  17407742 tcgtaggt 17407735  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 29857465 - 29857580
Alignment:
Q  167 tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag 266  Q
    ||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || |  |||| ||||||||     
T  29857465 tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa 29857564  T
Q  267 tcacaagcatgcataa 282  Q
    ||||||||||| ||||    
T  29857565 tcacaagcatgaataa 29857580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 29857847 - 29857896
Alignment:
Q  558 gggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt 607  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  29857847 gggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttt 29857896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
Q  339 tcaccggtagcaaccacaagccacctacaaatatattcaacttca 383  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||    
T  29857640 tcaccagtagcaaccacaagcgacctacaaatatactcaacttca 29857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 888402 - 888460
Alignment:
Q  168 gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac 226  Q
    |||| ||| ||||||||||| | | |||||||||| || ||||||||||||||||||||    
T  888402 gcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaac 888460  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 39733423 - 39733482
Alignment:
Q  182 aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc 241  Q
    ||||||||| || | |||||| ||||||||||||||||||||||||||||| || |||||    
T  39733423 aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc 39733482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
Q  336 ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca 383  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  39733577 ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca 39733624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
Q  336 ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca 383  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  39839381 ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca 39839334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 39839535 - 39839476
Alignment:
Q  182 aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc 241  Q
    ||||||||| || | |||||| ||||||||||||||||||||||||||||| || |||||    
T  39839535 aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc 39839476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 39839210 - 39839134
Alignment:
Q  531 tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt 607  Q
    |||||||||||||||||||| |  ||||| | |||||  || ||||||||||| |||||||| || |||||||||||    
T  39839210 tttgaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt 39839134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 31290123 - 31290047
Alignment:
Q  531 tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt 607  Q
    |||||||||||||||||||| |  ||| | | |||||  || ||||||||||| ||| ||||||| |||||||||||    
T  31290123 tttgaagggtattcagggaaatcttcaagcattggaaggttaggtagttgacataatggtttaggaaggtgaagttt 31290047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 50667920 - 50667862
Alignment:
Q  168 gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac 226  Q
    |||| ||||||||||||||| | | |||||||||| |||||||| ||||| ||||||||    
T  50667920 gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac 50667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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