View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_high_8 (Length: 574)
Name: NF12029_high_8
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Complemental strand, 2955268 - 2954747
Alignment:
| Q |
15 |
atgaatgatcgattatgcaaaaatgtgtaaacaaatttcaagtgtaaggagcttacagttacagttacaagtatgttaatactccttttaggtagaatat |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2955268 |
atgaatgatcaattatgcaaaaatgtgtaaacaa-tttcaagtgtaaggagcttacagttacagttacaagtatgttaatatcccttttaggtagaattt |
2955170 |
T |
|
| Q |
115 |
gttggacttgatgtatggagtgttgtaataaattgataggcacaagtgaaaggcacactttggacaaaaaggaatgagtaaattgaagaaataaaagaca |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2955169 |
gtttgacttgatgtatggagtgttgtaataaattgaaaggcacaagtgaaaggcacactttggacaaa--ggaatgagtaaattgaagaaataaaagaca |
2955072 |
T |
|
| Q |
215 |
tcgagaggaaagggctttgggctataaagccagtttggtgagaagagacaatgtcaccaaaacactcgtataatctattgacacac--gcacacccatac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2955071 |
tcgagaggaaagggctttgggctataaagccagtttggtaagaagagacaatgtcaccaaaacactcgtataatctattgacacacacgcacacccatac |
2954972 |
T |
|
| Q |
313 |
gcgtgctcatgcacataattttatcgattctatgccatgaattcttataaaacccagctggaaaaccatcctgcttggtgccttttaagggttcgtgcta |
412 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2954971 |
gcgtgctcacacacacaattttatcgattctatgccatgaattcttataaaacccagctggaaaaccatcctgcttggtgccttttaagggttcgtgcta |
2954872 |
T |
|
| Q |
413 |
aacactgcctgcttgattttattttgactaagacgcaccctcgttctaacaatcatggtgttttaaagacttggaaaactaatatttgttcggaaccatc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2954871 |
aacactgcctgcttgattttattttgactaagacgcaccctcgttctaacaatcatggtgttttaaagacttggaaaactaatatttgttcggaaccatc |
2954772 |
T |
|
| Q |
513 |
agcaagttcaccatgacttgaactt |
537 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2954771 |
agcaagttcaccatgacttgaactt |
2954747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 42620515 - 42620459
Alignment:
| Q |
178 |
acaaaaaggaatgagtaaattgaagaaataaaagacatcgagaggaaagggctttgg |
234 |
Q |
| |
|
||||||||||||||| || | ||||||||| ||||||| | ||||| |||||||||| |
|
|
| T |
42620515 |
acaaaaaggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg |
42620459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 19382798 - 19382850
Alignment:
| Q |
181 |
aaaaggaatgagtaaattgaagaaataaaagacatcgagaggaaagggctttg |
233 |
Q |
| |
|
|||||||| ||| || | ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
19382798 |
aaaaggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg |
19382850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University