View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_10 (Length: 537)
Name: NF12029_low_10
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 51855275 - 51855556
Alignment:
| Q |
1 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttg |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
51855275 |
gataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttg |
51855374 |
T |
|
| Q |
101 |
ctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttga |
200 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855375 |
ctagatctgatctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttga |
51855474 |
T |
|
| Q |
201 |
tagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855475 |
tagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
51855556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 35043206 - 35042925
Alignment:
| Q |
1 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttg |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||| |
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| T |
35043206 |
gataaaaacaggagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattcagtttgtccaataacttg |
35043107 |
T |
|
| Q |
101 |
ctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttgataattttgtgatatgtacattccaaggttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043106 |
ctagatctggtctctgccagccacttcccaatcaagcgatatacatccgaaacctcttcattactttgataattttgtgatatgtacattccaaggttga |
35043007 |
T |
|
| Q |
201 |
tagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35043006 |
tagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgccatccagaagcagagcaaacaattagtac |
35042925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 278 - 529
Target Start/End: Original strand, 51855844 - 51856095
Alignment:
| Q |
278 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855844 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaaggctattctccaataacataattctaacattttatattcaagt |
51855943 |
T |
|
| Q |
378 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
477 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855944 |
aaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
51856043 |
T |
|
| Q |
478 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
51856044 |
agtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctc |
51856095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 35042641 - 35042588
Alignment:
| Q |
278 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggcc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35042641 |
agtacacaaatacacaaatctggcagatgaacttctcctaccagccttagggcc |
35042588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 278 - 529
Target Start/End: Original strand, 8945031 - 8945281
Alignment:
| Q |
278 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945031 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttaggggcaaaggctattctccaataacataattctaacattttatattcaagt |
8945130 |
T |
|
| Q |
378 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
477 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945131 |
aaagttaagtcaacatgaacaaacattt-taaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
8945229 |
T |
|
| Q |
478 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
8945230 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctc |
8945281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8944510 - 8944678
Alignment:
| Q |
1 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
8944510 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattatttaaacattaaacagaattaagtttgtccaataacttg |
8944609 |
T |
|
| Q |
101 |
ctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttga |
169 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944610 |
ctacatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattactttga |
8944678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 1869515 - 1869644
Alignment:
| Q |
144 |
catctgaaacctcttcattactttgataatttt--gtgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgct |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |||||| |
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|
| T |
1869515 |
catctgaagtctcttcattactttgataatatttggtgatatgtacatcctaaggttgatagccatttcattttgaccttgagcacaaaaaagttttgct |
1869614 |
T |
|
| Q |
242 |
tcttcaatctgctatccagaagcagagcaa |
271 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| |
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|
| T |
1869615 |
tcttcaatctgccatccggaaccagagcaa |
1869644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 8944674 - 8944743
Alignment:
| Q |
213 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8944674 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
8944743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 26887149 - 26887003
Alignment:
| Q |
1 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaattaactctgtccaataacttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
26887149 |
gataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttg |
26887050 |
T |
|
| Q |
101 |
ctagatctggtctctgccagccacttcccaatcaagcgatatacatc |
147 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26887049 |
ctagatctggtctctgccggccacttcccaatcaagcgatatacatc |
26887003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 507
Target Start/End: Original strand, 24269829 - 24269886
Alignment:
| Q |
449 |
aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
507 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
24269886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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