View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_11 (Length: 482)
Name: NF12029_low_11
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 15000284 - 15000088
Alignment:
| Q |
57 |
aaaatcatgtatgattaaaatatctaatttatcttatctttcattactctattaaaaccattcattatataatccacaactcataattcaattgctaaaa |
156 |
Q |
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| T |
15000284 |
aaaatcatttatgcttaaaatatctactttatcttatctttcattactctattaaaaccattcattatataatccacagttcacgattcaattggcaaaa |
15000185 |
T |
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| Q |
157 |
acgttgaaattgctaggccgaacaccgtaagtgcaatttgaacctcaatttctccatttatatgtgtgaatttccaataactattgtcattttatccgt |
255 |
Q |
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| T |
15000184 |
atgtcaaaagttctaggccgaacgccttaagtgcaatttgaacctcaatttttttatt--tgcgtgtgaatttccaataactattgtcattttctccgt |
15000088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 15030125 - 15030007
Alignment:
| Q |
85 |
ttatcttatctttcattactctattaaaaccattcattatataatccacaactcataattcaattgctaaaaacgttgaaattgctaggccgaacaccgt |
184 |
Q |
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| T |
15030125 |
ttatcttatctttcattactctattaaaaccattcattatataatccacaactcataattcaattggaaaaaatgtcgaaattgctaggccgaacacggt |
15030026 |
T |
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| Q |
185 |
aagtgcaatttgaacctca |
203 |
Q |
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| T |
15030025 |
aagtgcaatttaaacctca |
15030007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 15015195 - 15015031
Alignment:
| Q |
89 |
cttatctttcattactctattaaaaccattcattatataatccacaactcataattcaattgctaaaaacgttgaaa-ttgctaggccgaacaccgtaag |
187 |
Q |
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| T |
15015195 |
cttatcttttattactctattaaa-ccattcattatataatctacaactcataattcaattggtaaaaatgtcgaaaattgttaaaccaaacgccgtaag |
15015097 |
T |
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| Q |
188 |
tgcaatttgaacctcaatttctccatttatatgtgtgaatttccaataactattgtcattttatcc |
253 |
Q |
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| T |
15015096 |
tgcgatttgaacctcaatttcttcatttatatgtgtgaattttcaataattattgtcattttatcc |
15015031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 49465198 - 49465166
Alignment:
| Q |
219 |
tgtgtgaatttccaataactattgtcattttat |
251 |
Q |
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| T |
49465198 |
tgtgtgaacttccaataactattgtcattttat |
49465166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 21608799 - 21608836
Alignment:
| Q |
212 |
atttatatgtgtgaatttccaataactattgtcatttt |
249 |
Q |
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| T |
21608799 |
atttatatgtgtgaatttacaataactattatcatttt |
21608836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 4861604 - 4861563
Alignment:
| Q |
208 |
ctccatttatatgtgtgaatttccaataactattgtcatttt |
249 |
Q |
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| T |
4861604 |
ctccaattatatgtgtgaatttccaataattattgttatttt |
4861563 |
T |
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