View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_12 (Length: 470)
Name: NF12029_low_12
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_12 |
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| [»] scaffold0181 (2 HSPs) |
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Alignment Details
Target: scaffold0181 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 158 - 451
Target Start/End: Original strand, 15964 - 16259
Alignment:
| Q |
158 |
aatcaatcatatgtagcattataataaaataaattggcatttaagattgaatatacgttcaattgaaagagttgcggtgtggtggcaagagtattgtacg |
257 |
Q |
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| T |
15964 |
aatcaatcatgtgtagcattataataaaataaattggcatttaagattgaatatacgttcaattgaaagagttgcggtgtggtggcaagagtgttgtacg |
16063 |
T |
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| Q |
258 |
tttgccaagggaaggtcacccatgcaacaataaatccttatcaacactacaattcattgttgtgacttatcaaattatcaattcaaaaataatag--ttt |
355 |
Q |
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| T |
16064 |
tttgccaagggaaggtcacccatgcaacaataaatccttatcaacactacaattcattgttgtgacttatcaaattatcaattcaaaaataatagttttt |
16163 |
T |
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| Q |
356 |
tttagaggtgacacatatgcataacttaaagttaagaatgaatcaatcatcaatcaagtttagtaagagaattagaaggtgttttttagaggtgcc |
451 |
Q |
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| T |
16164 |
tttagaggtgacatatatgcataacttaaagttaagaatgaatcaagcatcaatcaagtttagtaagagaatgagaagatgttttttagaggtgcc |
16259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 14813 - 14945
Alignment:
| Q |
14 |
agactcaaaaggaaacttaaacctccaaaacaacattaccttttctatttcttctggttcaaacaagagaaagtcaactcaaacaacatatttcaatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14813 |
agactcaaaaggaaacttaaacctccaaaacaacattaccttttctatttcttctggttcaaacaagagaaaatcaactcaaacaacatatttcaatttt |
14912 |
T |
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| Q |
114 |
tccaaacacactaaacaaaagatagaacaaaga |
146 |
Q |
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| T |
14913 |
tctaaacacactaaacaaaagatagaacaaaga |
14945 |
T |
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