View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_13 (Length: 466)

Name: NF12029_low_13
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_13
NF12029_low_13
[»] chr1 (12 HSPs)
chr1 (1-458)||(17408358-17408815)
chr1 (371-458)||(9828081-9828168)
chr1 (371-458)||(25934653-25934740)
chr1 (371-456)||(16164252-16164337)
chr1 (371-419)||(34371750-34371798)
chr1 (410-458)||(43112999-43113047)
chr1 (405-458)||(1486650-1486703)
chr1 (405-458)||(6427535-6427588)
chr1 (392-425)||(12918992-12919025)
chr1 (301-350)||(29856773-29856822)
chr1 (377-458)||(41597416-41597497)
chr1 (371-458)||(25361923-25362006)
[»] chr6 (11 HSPs)
chr6 (371-458)||(10294144-10294231)
chr6 (371-425)||(18367873-18367927)
chr6 (371-421)||(16488562-16488612)
chr6 (393-458)||(24645529-24645594)
chr6 (405-458)||(34595194-34595247)
chr6 (371-458)||(8365454-8365541)
chr6 (379-458)||(23130407-23130486)
chr6 (405-458)||(12696389-12696442)
chr6 (383-428)||(25038036-25038081)
chr6 (371-419)||(9195728-9195776)
chr6 (370-430)||(11352397-11352457)
[»] chr3 (7 HSPs)
chr3 (371-458)||(17005554-17005641)
chr3 (371-422)||(11665981-11666032)
chr3 (382-457)||(28812563-28812638)
chr3 (402-458)||(16192668-16192724)
chr3 (371-458)||(8039770-8039857)
chr3 (371-458)||(41961585-41961672)
chr3 (371-440)||(14832136-14832205)
[»] chr4 (12 HSPs)
chr4 (371-458)||(30982813-30982900)
chr4 (371-441)||(22234842-22234912)
chr4 (371-423)||(46083961-46084013)
chr4 (394-458)||(47264046-47264110)
chr4 (405-458)||(3947707-3947760)
chr4 (382-430)||(24613664-24613712)
chr4 (371-458)||(5414107-5414194)
chr4 (407-458)||(28000676-28000727)
chr4 (405-458)||(2361921-2361974)
chr4 (371-451)||(19482705-19482785)
chr4 (402-458)||(36635387-36635443)
chr4 (373-425)||(44132612-44132664)
[»] scaffold0036 (1 HSPs)
scaffold0036 (371-424)||(9716-9769)
[»] chr7 (10 HSPs)
chr7 (371-456)||(6630849-6630934)
chr7 (371-458)||(4008499-4008586)
chr7 (371-458)||(4013891-4013978)
chr7 (371-414)||(15902859-15902902)
chr7 (379-451)||(11072341-11072413)
chr7 (371-419)||(26329356-26329404)
chr7 (371-424)||(25822692-25822745)
chr7 (286-350)||(39732896-39732960)
chr7 (286-350)||(39839998-39840062)
chr7 (402-458)||(43027410-43027466)
[»] chr8 (12 HSPs)
chr8 (371-458)||(12570444-12570530)
chr8 (371-458)||(12570670-12570756)
chr8 (405-458)||(8343387-8343440)
chr8 (371-458)||(15816064-15816151)
chr8 (371-458)||(26902110-26902197)
chr8 (371-426)||(29447481-29447536)
chr8 (371-413)||(11927066-11927108)
chr8 (405-458)||(16641915-16641968)
chr8 (405-458)||(36450700-36450753)
chr8 (370-418)||(4122224-4122272)
chr8 (371-451)||(11944702-11944782)
chr8 (382-458)||(29447045-29447121)
[»] chr2 (9 HSPs)
chr2 (371-458)||(34784917-34785004)
chr2 (371-425)||(28524463-28524517)
chr2 (371-458)||(35056905-35056992)
chr2 (371-458)||(44860357-44860444)
chr2 (371-458)||(11223799-11223885)
chr2 (371-458)||(26769548-26769635)
chr2 (392-458)||(20242673-20242739)
chr2 (371-425)||(36096343-36096397)
chr2 (393-458)||(18840959-18841024)
[»] chr5 (7 HSPs)
chr5 (373-458)||(30183588-30183673)
chr5 (371-458)||(6401535-6401622)
chr5 (371-458)||(32766878-32766965)
chr5 (371-421)||(21814298-21814348)
chr5 (405-458)||(26312829-26312882)
chr5 (371-424)||(18592110-18592163)
chr5 (405-458)||(30098397-30098450)
[»] scaffold0003 (2 HSPs)
scaffold0003 (371-458)||(241631-241718)
scaffold0003 (414-458)||(236920-236964)
[»] scaffold0122 (1 HSPs)
scaffold0122 (414-451)||(7585-7622)
[»] scaffold0623 (1 HSPs)
scaffold0623 (371-425)||(5964-6018)
[»] scaffold0086 (1 HSPs)
scaffold0086 (371-460)||(2965-3054)
[»] scaffold0008 (1 HSPs)
scaffold0008 (371-452)||(263313-263394)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 17408358 - 17408815
Alignment:
Q  1 ttcggaaaatcaacttatgaggtagctgttatgttgatgaaaaggttaccaatttggatggtcgataagatattgcttggtctaactcgtgtgattttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408358 ttcggaaaatcaacttatgaggtagctgttatgttgatgaaaaggttaccaatttggatggtcgataagatattgcttggtctaactcgtgtgattttgg 17408457  T
Q  101 gaaatgtcgaaaagtatggtctaaaaaggccatgtatgggacctttagagcttaagaacacttccgggaagacaccggttttagatatcggagcacttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408458 gaaatgtcgaaaagtatggtctaaaaaggccatgtatgggacctttagagcttaagaacacttccgggaagacaccggttttagatatcggagcacttga 17408557  T
Q  201 gaaagttagatctggtgaaattaaagttgttcctggaataaagagattttcacaagggaaagttgaacttgttgatggaaaagttcttgatattgattct 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408558 gaaagttagatctggtgaaattaaagttgtttctggaataaagagattttcacaagggaaagttgaacttgttgatggaaaagttcttgatattgattct 17408657  T
Q  301 gttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggttagtttgtttagtccttctttgtaattatatgtgtcggtgttgtgttggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17408658 gttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggttagtttgtttagtccttctttgtaattatatatgtcggtgttgtgttggt 17408757  T
Q  401 atcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17408758 atcagacacgacacgtgtccgacaccaagatacacctaatctgaagagtgtctgtgct 17408815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 9828081 - 9828168
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||| ||||||||||||| ||||  || |||||||||||||||||| |||||| ||| ||  |||||| || ||||||| |||||    
T  9828081 tgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgct 9828168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 25934653 - 25934740
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||| | |||| ||| || |||||||||||||||||||||  |||||| ||| |||  | ||||||| |||||    
T  25934653 tgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgct 25934740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 16164337 - 16164252
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtg 456  Q
    ||||||||||||||||  ||| |||||||| |  ||| | ||||||||| |||||||||| || ||||||| ||||||||| ||||    
T  16164337 tgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaatccgaagagtgtatgtg 16164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 34371750 - 34371798
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 419  Q
    ||||||||||||||||||||| |||||||| || || ||||||||||||    
T  34371750 tgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtc 34371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 458
Target Start/End: Original strand, 43112999 - 43113047
Alignment:
Q  410 gacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||| |||||||||||| ||| ||||||||||||||||| |||||||||    
T  43112999 gacatgtgtctgacaccgggacacacctaatctgaagagagtctgtgct 43113047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 1486703 - 1486650
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||| |||||| ||| || ||||||| || |||||||||||||    
T  1486703 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgct 1486650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 6427535 - 6427588
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||| |||||| ||| || |||||||||| ||||||| |||||    
T  6427535 gacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgct 6427588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 12918992 - 12919025
Alignment:
Q  392 tgtgttggtatcagacacgacacgtgtctgacac 425  Q
    |||||||||||| |||||||||||||||||||||    
T  12918992 tgtgttggtatcggacacgacacgtgtctgacac 12919025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 29856822 - 29856773
Alignment:
Q  301 gttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 350  Q
    ||||||||||||||||| ||| | |||||||| || ||||||||||||||    
T  29856822 gttgttcttgctactggatatcgtagcaatgtcccttcttggcttaaggt 29856773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 41597497 - 41597416
Alignment:
Q  377 tatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||| ||||||||||  || || |||||||||||||||||||||  |||||| | | |||  | |||||||||||||    
T  41597497 tatatgtgttggtgttgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgct 41597416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 25361923 - 25362006
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||||| |||| |||| ||| || |||||||||  |||| |||||| ||| |||||||||| |||||||||| |||||    
T  25361923 tgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacacc-gga-acacctaatccgaagagtgtccgtgct 25362006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 10294144 - 10294231
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| |||||||| || ||||||||| ||||| || || |||| ||| ||||||||| |||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgct 10294231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 18367873 - 18367927
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 425  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  18367873 tgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacac 18367927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 16488612 - 16488562
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctg 421  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  16488612 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 16488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 24645529 - 24645594
Alignment:
Q  393 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||| ||| |||||||||||||||||| ||||||| || ||  |||||| ||||||||||||||||    
T  24645529 gtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgct 24645594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 34595194 - 34595247
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||||||||||| ||| |||||||||| || ||||||| |||||    
T  34595194 gacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgct 34595247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 8365541 - 8365454
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| | |||||||||| |||| |||||| ||||||||||||||| |||||  ||| || ||||||| || |||| || |||||    
T  8365541 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgct 8365454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 23130486 - 23130407
Alignment:
Q  379 tatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| ||||  ||||||| ||||||||||||||||||||| | | ||| |  |||||||||| |||||| ||||||    
T  23130486 tatgtgtcagtgtcatgttggtgtcagacacgacacgtgtctgatatcgggacatgcctaatctgaggagtgtatgtgct 23130407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 12696389 - 12696442
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||||||||||| ||| |||||| |||  | |||||||||||||    
T  12696389 gacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgct 12696442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 25038081 - 25038036
Alignment:
Q  383 tgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccag 428  Q
    ||||||| |||||||||| || ||||||||||||||| ||||||||    
T  25038081 tgtcggtattgtgttggtgtccgacacgacacgtgtccgacaccag 25038036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 9195776 - 9195728
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 419  Q
    ||||||||||||||||||||| |||| ||| || ||||||||| |||||    
T  9195776 tgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtc 9195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 11352397 - 11352457
Alignment:
Q  370 ttgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccagga 430  Q
    |||||||||||||| ||  ||| |||| |||||||||||| ||||||||| |||| |||||    
T  11352397 ttgtaattatatgtatcaatgtcgtgtcggtatcagacacaacacgtgtccgacatcagga 11352457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 17005641 - 17005554
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||| ||  |||||| || |||||| ||||||    
T  17005641 tgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgct 17005554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 11665981 - 11666032
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctga 422  Q
    ||||||||||||||||||||| |||||| | | |||||||||||||||||||    
T  11665981 tgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtctga 11666032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 457
Target Start/End: Original strand, 28812563 - 28812638
Alignment:
Q  382 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgc 457  Q
    |||||||||| |||||||| |||||||||| || |||| |||| ||||| || ||||||| || ||||||||||||    
T  28812563 gtgtcggtgtcgtgttggtgtcagacacgatacatgtccgacagcaggacacgcctaatccgaggagtgtctgtgc 28812638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 16192724 - 16192668
Alignment:
Q  402 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||| |||||| ||||||    
T  16192724 tcagacacgacacgtgtctgacaccgggacatacctaatatgaggagtgtttgtgct 16192668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 8039857 - 8039770
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| |||| ||| || |||| || || |||| |||||| ||| || | ||||| ||||||| ||||||||    
T  8039857 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgct 8039770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 41961672 - 41961585
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| | |||||||||| |||| |||||| ||||||||||||||| |||||  ||| || ||||||| ||  |||||| |||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgct 41961585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 14832136 - 14832205
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaat 440  Q
    |||||||| | ||||| |||| |||| |||||| ||||||||||||||| |||||| ||| || ||||||    
T  14832136 tgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgggacacgcctaat 14832205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 30982900 - 30982813
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||| |||||||||| |||| ||| |||||||||||||||||| |||||| ||| || |||||||  ||||||||| |||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgct 30982813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 22234912 - 22234842
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatc 441  Q
    ||||||| ||||||||||||| |||| ||| || ||||||||||||||| |||||||||| ||| ||||||    
T  22234912 tgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatc 22234842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 46084013 - 46083961
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgac 423  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  46084013 tgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtctgac 46083961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 458
Target Start/End: Original strand, 47264046 - 47264110
Alignment:
Q  394 tgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||| ||||| ||||||| ||||||||||||||| || ||||||| |||||| |||||||||    
T  47264046 tgttggtgtcagatacgacacatgtctgacaccaggacacgcctaatccgaagagcgtctgtgct 47264110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 3947760 - 3947707
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||| |||||||||| |||||||||| || ||||||| |||||    
T  3947760 gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgct 3947707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 24613712 - 24613664
Alignment:
Q  382 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccagga 430  Q
    ||||||||||  ||| ||| |||||||||||||||||||||||||||||    
T  24613712 gtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacaccagga 24613664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 5414194 - 5414107
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||| ||||||| ||||  || || |||||||||||||||||||||  ||| |||||| |||  | ||||||| |||||    
T  5414194 tgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgct 5414107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 28000727 - 28000676
Alignment:
Q  407 cacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| |||||    
T  28000727 cacgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgct 28000676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 2361974 - 2361921
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| |||||||||||||  || ||||||||||||| ||||||| |||||    
T  2361974 gacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgct 2361921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 19482705 - 19482785
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgt 451  Q
    |||||||| | |||| ||||| |||| |||||  ||||||||||||||| |||||  ||| |||||||||| || ||||||    
T  19482705 tgtaattacaagtgttggtgtcgtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgt 19482785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 36635387 - 36635443
Alignment:
Q  402 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||| ||| |||||| ||| || ||||||| |||||||||| |||||    
T  36635387 tcagacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtgct 36635443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 44132664 - 44132612
Alignment:
Q  373 taattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 425  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||    
T  44132664 taattatatgtgtcggtgtcgtgttggtgtcgaacacaacatgtgtctgacac 44132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 9769 - 9716
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgaca 424  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  9769 tgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgaca 9716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 6630934 - 6630849
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtg 456  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||| | ||||||| || ||||||||||||| |||||| ||||    
T  6630934 tgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacacacctaatctgaggagtgtgtgtg 6630849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 4008586 - 4008499
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||| ||||||||||| |||| | | | || |||||| |||||||| ||| |||||||||||||||||||| ||| || ||||||    
T  4008586 tgtaattgtatgtgtcggtattgtatcgatgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgct 4008499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 4013978 - 4013891
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||| ||||||||||| |||| | | | || |||||| |||||||| ||| |||||||||||||||||||| ||| || ||||||    
T  4013978 tgtaattgtatgtgtcggtattgtatcgatgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgct 4013891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 15902859 - 15902902
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacac 414  Q
    |||||||||||||||||||||||||| |||||| ||||||||||    
T  15902859 tgtaattatatgtgtcggtgttgtgtcggtatcggacacgacac 15902902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 11072341 - 11072413
Alignment:
Q  379 tatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgt 451  Q
    ||||||||||||| |||| |||||| ||||||| || || |  ||||| | ||||||||||||||||||||||    
T  11072341 tatgtgtcggtgtcgtgtcggtatctgacacgatacatgaccaacaccggaatacacctaatctgaagagtgt 11072413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 26329404 - 26329356
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 419  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||||||    
T  26329404 tgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 25822692 - 25822745
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgaca 424  Q
    |||||||| | |||||||||| || | |||||| ||||||||||||||||||||    
T  25822692 tgtaattacaagtgtcggtgtcgtatcggtatcggacacgacacgtgtctgaca 25822745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 39732960 - 39732896
Alignment:
Q  286 cttgatattgattctgttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 350  Q
    |||||||||||| | ||||||||||||||||| ||  | |||||||| || ||||||||| ||||    
T  39732960 cttgatattgatgcagttgttcttgctactggttaccgcagcaatgtcccttcttggcttcaggt 39732896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 39839998 - 39840062
Alignment:
Q  286 cttgatattgattctgttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 350  Q
    |||||||||||| | ||||||||||||||||| ||  | |||||||| || ||||||||| ||||    
T  39839998 cttgatattgatgcagttgttcttgctactggttaccgcagcaatgtcccttcttggcttcaggt 39840062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 43027466 - 43027410
Alignment:
Q  402 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||||||| |||||| ||| || ||||||| || ||||||| |||||    
T  43027466 tcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgct 43027410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 12570530 - 12570444
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||| ||| || | ||| |||||||| ||||||||| |||||||||| || ||||||||||||| |||| |||||    
T  12570530 tgtaattatatgtgtcgatgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgct 12570444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 12570756 - 12570670
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||| ||| ||||| || | ||| |||||||| ||||||||| |||||||||| || ||||||||||||| |||| |||||    
T  12570756 tgtaattatatatgttggtgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgct 12570670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 8343387 - 8343440
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||| |||||| ||| || ||||||| ||||||||||||||||    
T  8343387 gacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgct 8343440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 15816151 - 15816064
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||| |||||||||| |||||||| || |||||||||||  || |||||| ||| || ||||||| ||  |||||| |||||    
T  15816151 tgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgct 15816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 26902197 - 26902110
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| || |  || || ||||||||||||||||| |||  ||| || ||| |||||| ||||||| |||||    
T  26902197 tgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgct 26902110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 29447481 - 29447536
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacacc 426  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||| ||||| ||||||    
T  29447481 tgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacacc 29447536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 11927108 - 11927066
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgaca 413  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  11927108 tgtaattatatgtgtcggtgtcgtgttggtgtcatacacgaca 11927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 16641968 - 16641915
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||| |||||| ||||| ||| |||||||||| || |||||||||||||    
T  16641968 gacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgct 16641915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 36450753 - 36450700
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| |||||| |||||||||| || ||||||| || |||||||||||||    
T  36450753 gacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgct 36450700  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 4122272 - 4122224
Alignment:
Q  370 ttgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgt 418  Q
    |||||||||||||||||||||||||||   | ||| |||||||||||||    
T  4122272 ttgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgt 4122224  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 11944702 - 11944782
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgt 451  Q
    ||||||||||||||||||||| |||||| | ||| |||||||| || || ||||||  || || ||||||| || ||||||    
T  11944702 tgtaattatatgtgtcggtgtcgtgttgatgtcatacacgacatgtatccgacaccgagacacgcctaatccgatgagtgt 11944782  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 29447121 - 29447045
Alignment:
Q  382 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||  ||| ||| || ||||||||| |||||||||||||||| || |||||||  | ||||||| |||||    
T  29447121 gtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgct 29447045  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 34785004 - 34784917
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||  ||| || ||| ||  || |||||||||||||    
T  34785004 tgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgct 34784917  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 28524463 - 28524517
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 425  Q
    ||||||||||||||||| |||||||||||| || ||||| |||||||||||||||    
T  28524463 tgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacac 28524517  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 35056905 - 35056992
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| |||| ||| || ||||||||||||||| |||||    | || |||||||||| ||||||| |||||    
T  35056905 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgct 35056992  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 44860357 - 44860444
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| |||||||| |  ||||||||| ||||| |||| | ||| |||||||||  || ||||||| |||||    
T  44860357 tgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgct 44860444  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 11223885 - 11223799
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| | ||||||||||  ||| ||| || |||||||||| ||||||||||| ||| || |||||||||| ||||||| |||||    
T  11223885 tgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgct 11223799  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 26769548 - 26769635
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||| | ||||||||||  ||| |||||| ||||||||||||||| |||||  ||| || ||||||| || ||||||| |||||    
T  26769548 tgtaattacaagtgtcggtgtcatgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgct 26769635  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 20242739 - 20242673
Alignment:
Q  392 tgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||| ||| || ||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||    
T  20242739 tgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgct 20242673  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 36096397 - 36096343
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 425  Q
    ||||||||||| ||||||||| |||| | | || |||||||||||||||||||||    
T  36096397 tgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacac 36096343  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 458
Target Start/End: Complemental strand, 18841024 - 18840959
Alignment:
Q  393 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||| ||| ||||||||||||| |||| |||||| ||| |||||||||| || ||||||| |||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgct 18840959  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 458
Target Start/End: Original strand, 30183588 - 30183673
Alignment:
Q  373 taattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||| |||||  ||| || ||||||  ||  ||||||||||||    
T  30183588 taattacaagtgtcggtgtcgtgttggtatcagacacgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgct 30183673  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 6401535 - 6401622
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||||||||| ||||  || || |||||||||||||||||||||  |||||| ||| |||  | ||||||| |||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgct 6401622  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 32766965 - 32766878
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||||||||  |||| |||| ||| ||  | |||||||||||| |||||||||||||  ||||||||| ||||||| |||||    
T  32766965 tgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgct 32766878  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 21814298 - 21814348
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctg 421  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  21814298 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 21814348  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 26312829 - 26312882
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||| ||||||    
T  26312829 gacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtatgtgct 26312882  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 18592110 - 18592163
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgaca 424  Q
    |||||||||||||| |||||| |||| ||| || ||||| ||||||||||||||    
T  18592110 tgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgaca 18592163  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 30098397 - 30098450
Alignment:
Q  405 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||||| |||||||||| |||||||||| || || |||| |||||    
T  30098397 gacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgct 30098450  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 241631 - 241718
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    |||||||||  |||||||||| |||||||| || ||||||||||||||| |||||| ||| || ||||||| ||  |||||| |||||    
T  241631 tgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgct 241718  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 236964 - 236920
Alignment:
Q  414 cgtgtctgacaccaggatacacctaatctgaagagtgtctgtgct 458  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||    
T  236964 cgtgtctgacaccgggacacacctaatctgaggagtgtctgtgct 236920  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 7585 - 7622
Alignment:
Q  414 cgtgtctgacaccaggatacacctaatctgaagagtgt 451  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7585 cgtgtccgacaccaggatacacctaatctgaagagtgt 7622  T

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Target: scaffold0623 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 6018 - 5964
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 425  Q
    ||||||||||||||||||||| || | ||| ||  ||||||||||||||||||||    
T  6018 tgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacac 5964  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Original strand, 2965 - 3054
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgctcc 460  Q
    |||||||| | || || |||| |||| |||||||||||||||||||||  |||||| | | || ||||||| || ||||||| |||||||    
T  2965 tgtaattacaagtatcagtgtcgtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctcc 3054  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 263394 - 263313
Alignment:
Q  371 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtc 452  Q
    |||||||||| ||||| |||| |||| ||| |||||||||||||||||  || |||| || || ||||||| || |||||||    
T  263394 tgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtc 263313  T

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