View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_16 (Length: 444)
Name: NF12029_low_16
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 5375031 - 5374621
Alignment:
| Q |
19 |
attgctgtgaaagcaccaattgcaattatgtctctgtagtaatccattatgctaccaccaatcgacatagataagatgttaacaccatcttctatagctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5375031 |
attgctgtgaaagcaccaattgcaattatgtctctgtagtaatccattatgctaccaccaattgacatagataagatgttaacaccatcttctatagctt |
5374932 |
T |
|
| Q |
119 |
tatccattccagcagctatgtctgaagtgaaacaaccactaagccagcacaccttgtaagccgcgacacgggcttcagtagccatgcctcttgctgtacc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
5374931 |
tatccattccagcagctatgtctgaagtgaaacaaccactaagccagcacaccttgtaagctgcgacacgcgcttcagtagccatgcctcttgctgtacc |
5374832 |
T |
|
| Q |
219 |
agaagctaaaccaaataagctagcttctgctacaacagaacctgctgctgttgttaatgtgtgacttccatgtccatcatcatctctagctgattttgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374831 |
agaagctaaaccaaataagctagcttctgctacaacagaacctgctgctgttgttaatgtgtgacttccatgtccatcatcatctctagctgattttgat |
5374732 |
T |
|
| Q |
319 |
tctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagttttttgttgcagtgtgacgaattcatgttgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5374731 |
tctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagttttttgttgcagtgtgatgaattcatgttgt |
5374632 |
T |
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| Q |
419 |
taccactttca |
429 |
Q |
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| T |
5374631 |
taccagtttca |
5374621 |
T |
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Back To:
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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 320
Target Start/End: Original strand, 47367597 - 47367844
Alignment:
| Q |
73 |
ccaccaatcgacatagataagatgttaacaccatcttctatagctttatccattccagcagctatgtctgaagtgaaacaaccactaagccagcacacct |
172 |
Q |
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|||||||| |||||||| | || ||||||||| ||||| || || || || || |||||||||||||||| || || ||||||| |||||| ||||| | |
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| T |
47367597 |
ccaccaatagacatagagaggacgttaacaccgtcttcgatggccttgtcaatcgcagcagctatgtctgatgtaaagcaaccaccaagccaacacactt |
47367696 |
T |
|
| Q |
173 |
tgtaagccgcgacacgggcttcagtagccatgcctcttgctgtaccagaagctaaaccaaataagctagcttctgctacaacagaacctgctgctgttgt |
272 |
Q |
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||||||| || || || |||| |||||||||||| ||||||| |||||||| ||||| || | ||| ||| |||| || |||||||||||||||| || |
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| T |
47367697 |
tgtaagcggccactcgagcttgtgtagccatgccttttgctgtcccagaagcaaaaccgaagaggcttgctcctgcaactgcagaacctgctgctgtagt |
47367796 |
T |
|
| Q |
273 |
taatgtgtgacttccatgtccatcatcatctctagctgattttgattc |
320 |
Q |
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| | |||||||||||||| || |||||||| || | ||| |||||||| |
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| T |
47367797 |
tgaggtgtgacttccatgcccgtcatcatcccttggtgactttgattc |
47367844 |
T |
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