View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_17 (Length: 440)
Name: NF12029_low_17
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 8540042 - 8540239
Alignment:
| Q |
17 |
gagttgcaacaatttccaatctacaaatgagaacacaaattaggaatttattagaacaattaagttggtaactaagcactgagcaacgagaaaagagaaa |
116 |
Q |
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| T |
8540042 |
gagttgcaacaatttccaatctacaaatgagaacacaaattaggaatttattagaacaattgagttggtaactaagcactgagcaaagacaaaagagaaa |
8540141 |
T |
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| Q |
117 |
agtaatgaattataatgcacaccgcaaacagaagaaagtggcgaagtcgaccaccatagaaaacatttaggctagaagaacaaagtaactatttaggaa |
215 |
Q |
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| T |
8540142 |
agtaatgaattataacgcacactccaaacagaagaaagtggcgaagtcgaccaccatagaaaacatttaggctagaagaa-aaagtaagtacttaggaa |
8540239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 8540358 - 8540454
Alignment:
| Q |
273 |
tgtgtatgcgagggcaacagttgaagaaggacgagatagaatgaagttcttatttttggttaatgtgatggagtatttaattgatatggtagtgtat |
369 |
Q |
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| T |
8540358 |
tgtgtatgcgagggcaacggttgaagaaggacaagatagaatgaagtttttatttttggttgatgtggtggagtttttaattgatatggtggtgtat |
8540454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 8588375 - 8588470
Alignment:
| Q |
98 |
agcaacgagaaaagagaaaagtaatgaattataatgcacaccgcaaacagaagaaagtggcgaagtcgaccaccatagaaaacatttaggctagaa |
193 |
Q |
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| T |
8588375 |
agcaatgagcaaagagagaagtgatgaagtataatgcacaccacaaaccgaagaaagtggcgaagacgaccaccgtagaaaacatttaggctagaa |
8588470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8568921 - 8568997
Alignment:
| Q |
18 |
agttgcaacaatttccaatctacaaatgagaacacaaattaggaatttattagaacaattaagttggtaactaagca |
94 |
Q |
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| T |
8568921 |
agttgcaacattttccgatctaaaaatgggaatacaaattacgattttattagaacaattgagttggtaactaagca |
8568997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 8568997 - 8569038
Alignment:
| Q |
108 |
aaagagaaaagtaatgaattataatgcacaccgcaaacagaa |
149 |
Q |
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| T |
8568997 |
aaagagaaaagtaatgaagtatgatgcactccgcaaacagaa |
8569038 |
T |
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