View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_19 (Length: 421)

Name: NF12029_low_19
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_19
NF12029_low_19
[»] chr6 (5 HSPs)
chr6 (26-369)||(8445779-8446123)
chr6 (26-369)||(8454583-8454927)
chr6 (26-231)||(8441263-8441464)
chr6 (26-231)||(8450067-8450268)
chr6 (253-369)||(388427-388543)
[»] chr4 (4 HSPs)
chr4 (250-356)||(2857803-2857909)
chr4 (253-352)||(12099777-12099876)
chr4 (249-305)||(23540620-23540676)
chr4 (246-305)||(16833990-16834049)
[»] chr2 (4 HSPs)
chr2 (250-356)||(36682542-36682648)
chr2 (246-305)||(5709215-5709274)
chr2 (253-306)||(6747060-6747113)
chr2 (249-305)||(16464842-16464898)
[»] chr1 (3 HSPs)
chr1 (271-351)||(12496904-12496984)
chr1 (271-354)||(44921103-44921186)
chr1 (249-335)||(22855439-22855525)
[»] chr5 (2 HSPs)
chr5 (250-356)||(36830251-36830357)
chr5 (246-292)||(9964491-9964537)
[»] chr7 (2 HSPs)
chr7 (252-306)||(42648090-42648144)
chr7 (250-298)||(48187320-48187368)
[»] chr8 (1 HSPs)
chr8 (248-296)||(12667606-12667654)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 369
Target Start/End: Original strand, 8445779 - 8446123
Alignment:
Q  26 ttgagggagaagaaacctatttattgacaaaaacattggtcttt-gatttgcatgcctatgtgctagctgttacttgtgaagcaaaagaagccnnnnnnn 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||           
T  8445779 ttgagggagaagaaacctatttattgacaataacattggtcttttgatttgcatgtctatgtgttagctgttactcgtgaagcaaaagaagccaaaaag- 8445877  T
Q  125 caattgcaagtacaacatgtttttacctattttattgaagcaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 224  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8445878 caattgcaagtacaacatgtttttacctattttgttgaagtaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 8445977  T
Q  225 ttttactcctgggtttttagttatcagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgaca-ttttttgtaatttcctttaaag 323  Q
    |||||||  |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8445978 ttttacttttgggtttttagttatcagaaatgataaacaaacacaaattttttgacacaaatacgacatcaatgacatttttttgtaatttcctttaaag 8446077  T
Q  324 tgtaaggacaattttggaaaatcatccctctctttatgcaattgta 369  Q
    || |||||||||||| |||||||||| |||||||||||||||||||    
T  8446078 tgcaaggacaattttagaaaatcatctctctctttatgcaattgta 8446123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 369
Target Start/End: Original strand, 8454583 - 8454927
Alignment:
Q  26 ttgagggagaagaaacctatttattgacaaaaacattggtcttt-gatttgcatgcctatgtgctagctgttacttgtgaagcaaaagaagccnnnnnnn 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||           
T  8454583 ttgagggagaagaaacctatttattgacaataacattggtcttttgatttgcatgtctatgtgttagctgttactcgtgaagcaaaagaagccaaaaag- 8454681  T
Q  125 caattgcaagtacaacatgtttttacctattttattgaagcaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 224  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8454682 caattgcaagtacaacatgtttttacctattttgttgaagtaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 8454781  T
Q  225 ttttactcctgggtttttagttatcagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgaca-ttttttgtaatttcctttaaag 323  Q
    |||||||  |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8454782 ttttacttttgggtttttagttatcagaaatgataaacaaacacaaattttttgacacaaatacgacatcaatgacatttttttgtaatttcctttaaag 8454881  T
Q  324 tgtaaggacaattttggaaaatcatccctctctttatgcaattgta 369  Q
    || |||||||||||| |||||||||| |||||||||||||||||||    
T  8454882 tgcaaggacaattttagaaaatcatctctctctttatgcaattgta 8454927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 8441263 - 8441464
Alignment:
Q  26 ttgagggagaagaaacctatttattgacaaaaacattggtcttt-gatttgcatgcctatgtgctagctgttacttgtgaagcaaaagaagccnnnnnnn 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||           
T  8441263 ttgagggagaagaaacctatttattgacaataacattggtcttttgatttgcatgtctatgtgctagctgttactcgtgaagcaaaagaagcc-aaaaaa 8441361  T
Q  125 caattgcaagtacaacatgtttttacctattttattgaagcaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||    ||||||||||| ||||||    
T  8441362 caattgcaagtacaacatgtttttacctattttgttgaagcaaactcttaacagctgaaagtcaccttgacctagact----caaaatttgaatattttg 8441457  T
Q  225 ttttact 231  Q
    |||||||    
T  8441458 ttttact 8441464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 8450067 - 8450268
Alignment:
Q  26 ttgagggagaagaaacctatttattgacaaaaacattggtcttt-gatttgcatgcctatgtgctagctgttacttgtgaagcaaaagaagccnnnnnnn 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||           
T  8450067 ttgagggagaagaaacctatttattgacaataacattggtcttttgatttgcatgtctatgtgctagctgttactcgtgaagcaaaagaagcc-aaaaaa 8450165  T
Q  125 caattgcaagtacaacatgtttttacctattttattgaagcaaacttttaacggttgaaagtcaccttgacctagactcaaacaaaatttgaagattttg 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||    ||||||||||| ||||||    
T  8450166 caattgcaagtacaacatgtttttacctattttgttgaagcaaactcttaacagctgaaagtcaccttgacctagact----caaaatttgaatattttg 8450261  T
Q  225 ttttact 231  Q
    |||||||    
T  8450262 ttttact 8450268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 388427 - 388543
Alignment:
Q  253 aatgataaacaaacactgattttttgacacaaatacgacaccaatgacatttt-ttgtaatttcctttaaagtgtaaggacaattttggaaaatcatccc 351  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||  ||||| |||||||| ||||||||||| ||||||||||||| |||||||||||    
T  388427 aatgataaacaaacacagattttgagacacaaatacgacaccaatggtatttttttgtaattccctttaaagtgcaaggacaattttgtaaaatcatccc 388526  T
Q  352 tctctttatgcaattgta 369  Q
    | || |||||||| ||||    
T  388527 t-tccttatgcaagtgta 388543  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 356
Target Start/End: Complemental strand, 2857909 - 2857803
Alignment:
Q  250 agaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatc 349  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||| ||||||||||||||| || ||||| |||||||  ||||| ||    
T  2857909 agaaatgataaacaaacacagattttttgacacaaaaaagacaccaatgccatttttcgtaatttcctttaaaatgcaaggaaaattttgtgaaatcgtc 2857810  T
Q  350 cctctct 356  Q
    |||||||    
T  2857809 cctctct 2857803  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 12099876 - 12099777
Alignment:
Q  253 aatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatccct 352  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||  ||||||| | ||| ||||||||||| ||||||||||||| ||||||||||||    
T  12099876 aatgataaacaaacacagattttgagacacaaatacgacaccaatggtatttttttttattccctttaaagtgcaaggacaattttgtaaaatcatccct 12099777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 23540676 - 23540620
Alignment:
Q  249 cagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacatttt 305  Q
    ||||||||||||||||||||  |||||| ||||||| ||| | ||||||||||||||    
T  23540676 cagaaatgataaacaaacacaaatttttagacacaattacaataccaatgacatttt 23540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 16833990 - 16834049
Alignment:
Q  246 tatcagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacatttt 305  Q
    |||||||||||||||||||||||  |  ||||||||||||||||||| || || ||||||    
T  16833990 tatcagaaatgataaacaaacacataacttttgacacaaatacgacatcagtggcatttt 16834049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 36682542 - 36682648
Alignment:
Q  250 agaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatc 349  Q
    ||||||||||||||||||| | |||||||||||||| | |||||||||| || ||||||||||||| ||||||||| ||||| |||||||  ||||||||    
T  36682542 agaaatgataaacaaacacaggttttttgacacaaaaaagacaccaatggcaatttttgtaatttcttttaaagtgcaaggataattttgtgaaatcatc 36682641  T
Q  350 cctctct 356  Q
    |||||||    
T  36682642 cctctct 36682648  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 5709215 - 5709274
Alignment:
Q  246 tatcagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacatttt 305  Q
    |||||||||||||||||||||||  || ||||||||||||||||||| || || ||||||    
T  5709215 tatcagaaatgataaacaaacacatatattttgacacaaatacgacatcagtggcatttt 5709274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 6747113 - 6747060
Alignment:
Q  253 aatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttt 306  Q
    ||||||||||||||||  |  ||||||||||||||| |||||||||||| ||||    
T  6747113 aatgataaacaaacacacaaattttgacacaaatacaacaccaatgacaatttt 6747060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 16464898 - 16464842
Alignment:
Q  249 cagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacatttt 305  Q
    ||||||||||||||||||||  |  ||||||||||||||||||| || || ||||||    
T  16464898 cagaaatgataaacaaacacataacttttgacacaaatacgacatcagtggcatttt 16464842  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 12496984 - 12496904
Alignment:
Q  271 attttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatccc 351  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  12496984 attttttgacacaaaaatgacaccaatgagattttttgtaatttcctttaaattgcaaggacaattttgtaaaatcatccc 12496904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 44921186 - 44921103
Alignment:
Q  271 attttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatccctct 354  Q
    ||||||| |||||||   |||||||||||||||||||||||||| |||||||||| | | | ||||||| ||||||||||||||    
T  44921186 atttttttacacaaaatggacaccaatgacattttttgtaattttctttaaagtgcaggaataattttgtaaaatcatccctct 44921103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 22855439 - 22855525
Alignment:
Q  249 cagaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaat 335  Q
    ||||||||||| |  |||||  ||||||||||||||| | ||||||||||  ||||| |||||||| |||||||||| |||||||||    
T  22855439 cagaaatgatacatgaacacacattttttgacacaaaaatgacaccaatggtattttctgtaattttctttaaagtgcaaggacaat 22855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 356
Target Start/End: Complemental strand, 36830357 - 36830251
Alignment:
Q  250 agaaatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttttgtaatttcctttaaagtgtaaggacaattttggaaaatcatc 349  Q
    |||||||||||||| |||  | ||||||| |||||| | |||||||||| |||||||||||||||| ||||||||| | ||| ||||||   ||||||||    
T  36830357 agaaatgataaacagacataggttttttggcacaaaaaagacaccaatggcattttttgtaatttcttttaaagtgcatggataattttatgaaatcatc 36830258  T
Q  350 cctctct 356  Q
    |||||||    
T  36830257 cctctct 36830251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 9964537 - 9964491
Alignment:
Q  246 tatcagaaatgataaacaaacactgattttttgacacaaatacgaca 292  Q
    |||||||||||||||||||||||  || |||||||| ||||||||||    
T  9964537 tatcagaaatgataaacaaacacatatattttgacataaatacgaca 9964491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 42648144 - 42648090
Alignment:
Q  252 aaatgataaacaaacactgattttttgacacaaatacgacaccaatgacattttt 306  Q
    |||||||||||||||||  || ||||||||||||||||||| ||||| |||||||    
T  42648144 aaatgataaacaaacacatatattttgacacaaatacgacatcaatggcattttt 42648090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 48187368 - 48187320
Alignment:
Q  250 agaaatgataaacaaacactgattttttgacacaaatacgacaccaatg 298  Q
    |||||| ||||||||||||  | |||| |||||||||||||||||||||    
T  48187368 agaaataataaacaaacacacaattttagacacaaatacgacaccaatg 48187320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 12667654 - 12667606
Alignment:
Q  248 tcagaaatgataaacaaacactgattttttgacacaaatacgacaccaa 296  Q
    ||||||||||||||| |||||  ||| |||||||||||||| |||||||    
T  12667654 tcagaaatgataaacgaacacatattatttgacacaaatacaacaccaa 12667606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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