View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12029_low_2 (Length: 819)

Name: NF12029_low_2
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12029_low_2
NF12029_low_2
[»] chr1 (22 HSPs)
chr1 (18-543)||(2987184-2987712)
chr1 (605-808)||(2987772-2987960)
chr1 (612-798)||(4652028-4652212)
chr1 (305-457)||(5224977-5225129)
chr1 (301-456)||(45069903-45070057)
chr1 (324-461)||(13771141-13771278)
chr1 (609-734)||(37582405-37582530)
chr1 (605-726)||(11839527-11839649)
chr1 (716-797)||(17993868-17993949)
chr1 (307-407)||(26638566-26638666)
chr1 (332-447)||(30381231-30381347)
chr1 (649-696)||(34775212-34775260)
chr1 (650-696)||(16149116-16149162)
chr1 (657-772)||(28394835-28394947)
chr1 (664-709)||(32863255-32863300)
chr1 (644-696)||(32882707-32882760)
chr1 (308-392)||(18436296-18436380)
chr1 (657-696)||(9313042-9313081)
chr1 (657-696)||(27102522-27102561)
chr1 (649-696)||(52278622-52278669)
chr1 (301-407)||(29730885-29730990)
chr1 (730-772)||(32882646-32882688)
[»] chr3 (17 HSPs)
chr3 (607-808)||(1652527-1652727)
chr3 (605-789)||(30935026-30935210)
chr3 (330-461)||(49945364-49945493)
chr3 (662-758)||(7966771-7966867)
chr3 (323-431)||(47495738-47495846)
chr3 (332-407)||(29631690-29631764)
chr3 (302-392)||(12060215-12060305)
chr3 (302-382)||(38672717-38672797)
chr3 (304-407)||(45054701-45054804)
chr3 (661-717)||(22948431-22948488)
chr3 (716-755)||(27399241-27399280)
chr3 (662-742)||(38489080-38489162)
chr3 (657-687)||(14280251-14280281)
chr3 (716-758)||(16266008-16266050)
chr3 (676-725)||(22948347-22948397)
chr3 (323-392)||(32733685-32733754)
chr3 (301-342)||(37919287-37919328)
[»] chr7 (11 HSPs)
chr7 (307-459)||(41350320-41350472)
chr7 (605-797)||(38485808-38485997)
chr7 (606-754)||(9349995-9350143)
chr7 (296-407)||(42121381-42121492)
chr7 (657-696)||(3478689-3478728)
chr7 (304-407)||(37708441-37708544)
chr7 (716-772)||(28534274-28534330)
chr7 (657-688)||(28534206-28534237)
chr7 (301-356)||(33645162-33645217)
chr7 (660-694)||(16828805-16828839)
chr7 (716-774)||(23983482-23983540)
[»] chr8 (16 HSPs)
chr8 (609-777)||(30235769-30235938)
chr8 (310-461)||(2147872-2148026)
chr8 (609-796)||(10552517-10552696)
chr8 (335-447)||(38824638-38824751)
chr8 (613-722)||(5214964-5215073)
chr8 (605-796)||(35062707-35062891)
chr8 (719-808)||(41791017-41791105)
chr8 (304-439)||(11323098-11323233)
chr8 (355-445)||(16612229-16612319)
chr8 (665-783)||(32945407-32945522)
chr8 (323-456)||(24993603-24993737)
chr8 (304-407)||(14055842-14055943)
chr8 (330-435)||(41862585-41862689)
chr8 (342-446)||(2626903-2627007)
chr8 (302-350)||(6530428-6530476)
chr8 (716-757)||(25184905-25184946)
[»] chr2 (19 HSPs)
chr2 (644-797)||(18681318-18681471)
chr2 (607-798)||(31902063-31902253)
chr2 (334-457)||(2733163-2733286)
chr2 (665-752)||(29043993-29044080)
chr2 (675-797)||(915159-915280)
chr2 (605-728)||(6173866-6173990)
chr2 (607-796)||(9926463-9926635)
chr2 (320-412)||(4282841-4282933)
chr2 (303-407)||(41464061-41464165)
chr2 (307-379)||(18734240-18734312)
chr2 (610-711)||(22884768-22884870)
chr2 (307-412)||(44151465-44151570)
chr2 (665-696)||(24165886-24165917)
chr2 (610-688)||(33788279-33788358)
chr2 (304-389)||(5559661-5559746)
chr2 (716-757)||(16952129-16952169)
chr2 (716-757)||(17022794-17022834)
chr2 (716-757)||(17060100-17060140)
chr2 (305-342)||(36528477-36528514)
[»] chr6 (14 HSPs)
chr6 (610-808)||(12794344-12794544)
chr6 (645-798)||(27774840-27774986)
chr6 (657-754)||(6946871-6946969)
chr6 (301-447)||(22530872-22531018)
chr6 (303-405)||(21970855-21970957)
chr6 (664-772)||(9224200-9224305)
chr6 (657-742)||(26534433-26534517)
chr6 (302-360)||(5456531-5456589)
chr6 (606-725)||(26215672-26215792)
chr6 (732-783)||(26215784-26215835)
chr6 (335-397)||(533374-533436)
chr6 (302-392)||(7509633-7509723)
chr6 (657-702)||(21265323-21265369)
chr6 (657-694)||(17278164-17278201)
[»] chr4 (10 HSPs)
chr4 (302-463)||(2644594-2644755)
chr4 (648-804)||(43373783-43373943)
chr4 (607-770)||(35800709-35800872)
chr4 (606-771)||(19432304-19432469)
chr4 (645-749)||(35336856-35336962)
chr4 (664-722)||(43077281-43077339)
chr4 (302-407)||(50685654-50685759)
chr4 (301-407)||(14112173-14112278)
chr4 (690-796)||(24739938-24740044)
chr4 (304-342)||(54997695-54997733)
[»] chr5 (16 HSPs)
chr5 (605-798)||(31721926-31722102)
chr5 (605-797)||(24436064-24436259)
chr5 (613-754)||(31742446-31742588)
chr5 (304-397)||(10655423-10655516)
chr5 (605-798)||(36979156-36979344)
chr5 (310-406)||(5683387-5683483)
chr5 (302-407)||(12289065-12289170)
chr5 (301-395)||(29429683-29429777)
chr5 (647-696)||(13953939-13953989)
chr5 (649-694)||(24071954-24072000)
chr5 (649-696)||(30097673-30097721)
chr5 (301-407)||(141372-141478)
chr5 (301-339)||(33741597-33741635)
chr5 (715-796)||(39024193-39024272)
chr5 (330-407)||(12199290-12199365)
chr5 (302-395)||(14512841-14512934)
[»] scaffold0001 (1 HSPs)
scaffold0001 (311-443)||(508803-508935)
[»] scaffold1384 (1 HSPs)
scaffold1384 (657-711)||(1353-1408)
[»] scaffold1372 (1 HSPs)
scaffold1372 (325-364)||(97-136)
[»] scaffold1308 (1 HSPs)
scaffold1308 (325-364)||(1403-1442)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 2987184 - 2987712
Alignment:
Q  18 atgtcaagaggtcaaatccttaatcacatgtttaattcacacacatttggctgccaatatcaaagttagtatgcattattcatatatggaccatgcacct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2987184 atgtcaagaggtcaaatccttaatcacatgtttaattcacacacatttggctgccaatatcaaagttagtatgcattattcatatatggaccatgcacct 2987283  T
Q  118 ttctatttgctttcaaaaactggactggtcccaattacagacattgatgataaatcgttatacagttttgaaataattgcactgcgtttatggtctaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2987284 ttctatttgctttcaaaaactggactggtcccaattacagacattgatgataaatcgttatacagttttgaaataattgcactgcgtttatggtctaagg 2987383  T
Q  218 atttaaaatttatctaccaaa-ttttatctttattaccattggttaacaaacaaaaagatttagtcatctatgcactccaa-aactgggtcatgttaact 315  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||  | ||| | |||||||||    
T  2987384 atttaaaatttatctaccaaatttttatctttattaccattagttaacaaacaagaagatttagtcatctctgcactccaactattggataatgttaact 2987483  T
Q  316 tgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacg 415  Q
    | |||  |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2987484 tatgtgctaaggacacatgttaagcaaatcaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaacaaattaaatgcaatacg 2987583  T
Q  416 cgaattccaacaaaaagtttctatatttaactacttaacttgtgccctatttccctaaactattttatcaaaacaccccaaagaaaaaaag-nnnnnnnn 514  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             
T  2987584 cgaattccaacaaaaaatttctacatttaactccttaacttgtgccctatttccctaaactattttatcaaaacaccccaaagaaaaaaggttttttttt 2987683  T
Q  515 ccttatctaccaaaaacaccccaaagtaa 543  Q
    |||||||||||||||||||||||||||||    
T  2987684 ccttatctaccaaaaacaccccaaagtaa 2987712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 605 - 808
Target Start/End: Original strand, 2987772 - 2987960
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    |||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2987772 tcaggtctctacacaagacaaatagataccgatattaccgaaagtacaaactaaggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaa 2987871  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaactgacat 804  Q
    ||||||||| ||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2987872 cacccctgcaat---------------caacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaaatgacat 2987956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 612 - 798
Target Start/End: Complemental strand, 4652212 - 4652028
Alignment:
Q  612 tctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccct 711  Q
    ||||||||||||||| ||| |||| | |||| |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| | ||||    
T  4652212 tctgcacaagacgaagagagaccggtgttatagaaagtacaaactaagacaccgtatataggcggaacacctgaaaacaaacaccaacaaaaaaaaccct 4652113  T
Q  712 gcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaac 798  Q
    | |||||||||||||||  |||||||||| |||| |||||||  ||  ||| ||||||||| |||| ||||||||||||||||||||    
T  4652112 gtgatcaacacccataagtacaacacccaacaaactaaacat--cctcctacaactgactcctatagttaccaaccactgaaaaaac 4652028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 305 - 457
Target Start/End: Original strand, 5224977 - 5225129
Alignment:
Q  305 tcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatta 404  Q
    |||||||||||| ||   |||||  ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  5224977 tcatgttaacttatgctctaaggacacatgttaagcaaaccaaaaataaaaacattccattaatatttgtgcattcaactaattaaaagttaacaaatta 5225076  T
Q  405 aatgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttg 457  Q
    |||||||||| ||||||||||| || ||||| || |||||||| |||||||||    
T  5225077 aatgcaatacacgaattccaaccaatagtttttacatttaactccttaacttg 5225129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 45070057 - 45069903
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 400  Q
    |||||||| ||| |||||| | ||||||||  ||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45070057 tgggtcatattagcttgtgccctaagggta--tgttaagcaattctaaaatagaaatattccattaatatttgtgcattcaactaattaaaagttaataa 45069960  T
Q  401 attaaatgcaatacgcgaattccaaca-aaaagtttctatatttaactacttaactt 456  Q
    || |||||||||||   |||||||||| ||||||||||| |||||||| ||||||||    
T  45069959 ataaaatgcaatacattaattccaacaaaaaagtttctacatttaactccttaactt 45069903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 13771141 - 13771278
Alignment:
Q  324 aagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattcc 423  Q
    ||||||| ||||||||||| | ||||||||||||||||  ||||| ||| |||||| || ||| |||||||| | ||||||||  |||||| ||||||||    
T  13771141 aagggtatatgttaagcaacctaaaaatagaaatattttcttaatgtttatgcatttaattaactaaaagttgaaaaattaaactcaatacacgaattcc 13771240  T
Q  424 aacaaaaagtttctatatttaactacttaacttgtgcc 461  Q
    |||| ||| |||||| ||||||||  ||||||||||||    
T  13771241 aacataaaatttctacatttaactcattaacttgtgcc 13771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 609 - 734
Target Start/End: Complemental strand, 37582530 - 37582405
Alignment:
Q  609 gtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacc 708  Q
    |||||||||||||||||||||| ||  |  |||| |||||||||||||||| || ||||||| | ||||||||||||||| ||||| ||||||| |||||    
T  37582530 gtctctgcacaagacgaacagagacatacgttatagaaagtacaaactaagacgacgtatattgacggaacacccgaaaataaacatcaacaaagacacc 37582431  T
Q  709 cctgcgatcaacacccataacgacaa 734  Q
    | | ||||||||| |||||| |||||    
T  37582430 cttacgatcaacaaccataaggacaa 37582405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 605 - 726
Target Start/End: Complemental strand, 11839649 - 11839527
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaa 703  Q
    |||||||||||||||||||||||| | |||  | |||  ||||||||||||||| |||| |||||| | ||||||||||| ||||||||  ||||||||     
T  11839649 tcaggtctctgcacaagacgaacaaagacctgtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaacacccaaaaacaaatcccaacaaat 11839550  T
Q  704 acacccctgcgatcaacacccat 726  Q
    |||  ||||||||||||||||||    
T  11839549 acattcctgcgatcaacacccat 11839527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 716 - 797
Target Start/End: Original strand, 17993868 - 17993949
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaa 797  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||| ||| || || ||||||| |||||||||||||    
T  17993868 tcaacacccataaggacaacacccaccaaaataaacatcaccccttaaaagtgattcctaaacttacctaccactgaaaaaa 17993949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 26638666 - 26638566
Alignment:
Q  307 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 406  Q
    ||||||||||||| |||||||  |||||||||  || | || |||||||||||||  |||||| |||||||||||| ||||||||| |||| ||||||||    
T  26638666 atgttaacttgtgccataaggacacatgttaaagaacctaataatagaaatatttttttaatacttgtgcattcaaataattaaaaattaaaaaattaaa 26638567  T
Q  407 t 407  Q
    |    
T  26638566 t 26638566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 447
Target Start/End: Original strand, 30381231 - 30381347
Alignment:
Q  332 atgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaacta-attaaaagttaataaattaaatgcaatacgcgaattccaacaaaa 430  Q
    ||||||| ||| | ||||||| ||||||||| |||||| ||||| | |||| |  |||| | ||||| ||||||||| |||||| |||||| ||||||||    
T  30381231 atgttaaacaatctaaaaataaaaatatttccttaatacttgtgtagtcaaattgattagaggttaaaaaattaaattcaatacacgaatttcaacaaaa 30381330  T
Q  431 agtttctatatttaact 447  Q
    |||||||| | ||||||    
T  30381331 agtttctacaattaact 30381347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 696
Target Start/End: Complemental strand, 34775260 - 34775212
Alignment:
Q  649 tacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  34775260 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 34775212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 696
Target Start/End: Complemental strand, 16149162 - 16149116
Alignment:
Q  650 acaaactaaggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||    
T  16149162 acaatctaaggcgccgtatataggcggaacacgcgaaaataaacacc 16149116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 772
Target Start/End: Original strand, 28394835 - 28394947
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcac 756  Q
    |||| ||||||||||| || || |||||||| |||||||||| ||| ||| ||||||||| ||| | ||||| |   | |||||||||||||||   |||    
T  28394835 aaggtgccgtatatagacgaaatacccgaaagcaaacaccaataaagacatccctgcgattaacccacataagggttaaacccaccaaaataaa---cac 28394931  T
Q  757 ccactaaaactgactc 772  Q
    || |||||||||||||    
T  28394932 cccctaaaactgactc 28394947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 32863255 - 32863300
Alignment:
Q  664 cgtatataggcggaacacccgaaaacaaacaccaacaaaaacaccc 709  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  32863255 cgtatataggcggaacacctgaaaataaacaccaagaaaaacaccc 32863300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 696
Target Start/End: Complemental strand, 32882760 - 32882707
Alignment:
Q  644 gaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  32882760 gaaaatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacacc 32882707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 18436296 - 18436380
Alignment:
Q  308 tgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 392  Q
    |||||||||||| | | |||| |||||||||| || ||||||| ||||||||||| ||||  |||| |||||||| | |||||||    
T  18436296 tgttaacttgtgcccttagggcacatgttaagaaatccaaaaaaagaaatatttctttaaactttgagcattcaattcattaaaa 18436380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 696
Target Start/End: Original strand, 9313042 - 9313081
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  9313042 aaggcgtcgtatataggcggaacacccgaaaataaacacc 9313081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 696
Target Start/End: Complemental strand, 27102561 - 27102522
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  27102561 aaggtgccgtatataggcggaacacccgaaaataaacacc 27102522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 696
Target Start/End: Complemental strand, 52278669 - 52278622
Alignment:
Q  649 tacaaactaaggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    ||||| |||||||||| ||||||||||||||||| ||||| |||||||    
T  52278669 tacaagctaaggcgccatatataggcggaacacctgaaaataaacacc 52278622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 29730885 - 29730990
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 400  Q
    ||||||||| ||||||||||| |||||  | ||||||||||| |||||| |||||| |||   ||||  ||| || |||||| ||||||||||| || ||    
T  29730885 tgggtcatgctaacttgtgtc-taaggacatatgttaagcaatccaaaagtagaaacattctcttaaattttatgtattcaattaattaaaagtaaaaaa 29730983  T
Q  401 attaaat 407  Q
    |||||||    
T  29730984 attaaat 29730990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 772
Target Start/End: Complemental strand, 32882688 - 32882646
Alignment:
Q  730 gacaacacccaccaaaataaacatcacccactaaaactgactc 772  Q
    ||||||||||||||||||| ||||||||  |||||||||||||    
T  32882688 gacaacacccaccaaaatatacatcaccgcctaaaactgactc 32882646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 607 - 808
Target Start/End: Original strand, 1652527 - 1652727
Alignment:
Q  607 aggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaac 705  Q
    ||||||||||||||||| |||||| |||||| | |  ||||||||||||||| |||| ||||||||||||||||||||||||  ||||||| ||||| ||    
T  1652527 aggtctctgcacaagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaacacccgaaat-aaacacccacaaagac 1652625  T
Q  706 acccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaactgacatt 805  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||  |||  ||| |||||||| ||||||| ||||||    
T  1652626 acccttgcgatcaacactcataaggacaacacccaccaaaataaacatcaccccctaaaactgacttctatgtttaacaaccactaaaaaaac-gacatt 1652724  T
Q  806 cat 808  Q
    |||    
T  1652725 cat 1652727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 605 - 789
Target Start/End: Original strand, 30935026 - 30935210
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    ||||||||||| |||||||||||||| |||| | |||  |||| |||||||||||| | |||||||| ||| |||||||||||||||||||||||||| |    
T  30935026 tcaggtctctgtacaagacgaacagagaccggtcttactgaaaatacaaactaaggtgtcgtatataagcgaaacacccgaaaacaaacaccaacaaaga 30935125  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccac 789  Q
    || |||||  |||||||||| |||   ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  30935126 caaccctgtaatcaacacccttaagagcaacatccaccaaaataaacatcaccccctaaaactgactcttatacttaccagccac 30935210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 330 - 461
Target Start/End: Complemental strand, 49945493 - 49945364
Alignment:
Q  330 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaa 429  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  49945493 acatgttaagca--cccaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaacaaattaaatgcaatatacgaattccaacaaa 49945396  T
Q  430 aagtttctatatttaactacttaacttgtgcc 461  Q
    ||||||||| |||||| | |||||||||||||    
T  49945395 aagtttctacatttaattccttaacttgtgcc 49945364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 662 - 758
Target Start/End: Original strand, 7966771 - 7966867
Alignment:
Q  662 gccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcaccc 758  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  7966771 gccgtatatagacggaacacccgaaaacaaacacaaacaaagacacctttgcgatccacacccataaagacaactcccatcaaaataaacatcaccc 7966867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 47495738 - 47495846
Alignment:
Q  323 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattc 422  Q
    |||||| |||||||||||||   ||||||||||||||||| |||||||||||||||| || |||||||||||| | ||| ||||| |||||| ||||||     
T  47495738 taagggcacatgttaagcaactaaaaaatagaaatatttctttaatatttgtgcatttaattaattaaaagttgaaaaaataaattcaatacacgaattt 47495837  T
Q  423 caacaaaaa 431  Q
    ||| |||||    
T  47495838 caaaaaaaa 47495846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 29631764 - 29631690
Alignment:
Q  332 atgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaat 407  Q
    ||||||| ||| ||||||||| ||||||||| |||||| ||||||||||||  ||||||||||||| |||||||||    
T  29631764 atgttaaacaacccaaaaataaaaatatttccttaatacttgtgcattcaatcaattaaaagttaa-aaattaaat 29631690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 12060215 - 12060305
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 392  Q
    ||||||||||||||||||   |||||| | ||||||| |||  |||||||||||| ||||||||||  ||||||||||||| |||| ||||    
T  12060215 gggtcatgttaacttgtgctctaagggcatatgttaaacaactcaaaaatagaaacatttcattaaattttgtgcattcaattaatcaaaa 12060305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 38672717 - 38672797
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaa 382  Q
    ||||||||||||||| ||   ||| |||||||||||| ||| |||||||||||||||||   |||| ||||||||||||||    
T  38672717 gggtcatgttaacttctgctctaaaggtacatgttaaacaacccaaaaatagaaatattctcttaagatttgtgcattcaa 38672797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 45054804 - 45054701
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 403  Q
    |||||||||||||||| | |||||| |||||||||||||  ||||| |||||| ||| | || |  ||||| ||||||| |||| |||||| || |||||    
T  45054804 gtcatgttaacttgtgccctaagggcacatgttaagcaactcaaaagtagaaacattcccttgaattttgtacattcaattaatcaaaagtaaaaaaatt 45054705  T
Q  404 aaat 407  Q
    ||||    
T  45054704 aaat 45054701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 717
Target Start/End: Original strand, 22948431 - 22948488
Alignment:
Q  661 cgccgtatataggcggaacacccgaaaac-aaacaccaacaaaaacacccctgcgatc 717  Q
    ||||||||||| |||||||||| |||||| ||||||||||||| |||||| |||||||    
T  22948431 cgccgtatatatgcggaacacctgaaaacaaaacaccaacaaagacacccatgcgatc 22948488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 755
Target Start/End: Complemental strand, 27399280 - 27399241
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatca 755  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  27399280 tcaacacccatgaggacaacacccaccaaaataaacatca 27399241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 742
Target Start/End: Complemental strand, 38489162 - 38489080
Alignment:
Q  662 gccgtatataggcggaacacccgaaaacaaaca--ccaacaaaaacacccctgcgatcaacacccataacgacaacacccacc 742  Q
    ||||||||||||||||||||| | |||| || |  |||||||| ||| || ||||||||||||||| ||  ||||||||||||    
T  38489162 gccgtatataggcggaacacctgtaaacgaaaatcccaacaaagacatccatgcgatcaacacccaaaagaacaacacccacc 38489080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 687
Target Start/End: Original strand, 14280251 - 14280281
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaa 687  Q
    |||||||||||||||||||||||||||||||    
T  14280251 aaggcgccgtatataggcggaacacccgaaa 14280281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 758
Target Start/End: Complemental strand, 16266050 - 16266008
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcaccc 758  Q
    ||||||||||| | ||||||| |||||||||||||||||||||    
T  16266050 tcaacacccatgaggacaacatccaccaaaataaacatcaccc 16266008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 725
Target Start/End: Original strand, 22948347 - 22948397
Alignment:
Q  676 gaacacccgaaaacaaa-caccaacaaaaacacccctgcgatcaacaccca 725  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  22948347 gaacacctgaaaacaaaacaccaacaaagacacccatgcgatcaacaccca 22948397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 32733754 - 32733685
Alignment:
Q  323 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 392  Q
    |||||| |||||||||| || ||||||| ||||||||||  ||||  ||||||||||||| | |||||||    
T  32733754 taagggcacatgttaagaaatccaaaaaaagaaatattttcttaaactttgtgcattcaattcattaaaa 32733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 37919328 - 37919287
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaa 342  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  37919328 tgggtcatgttaacttgtttcttcagggtacatgttaagcaa 37919287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 307 - 459
Target Start/End: Complemental strand, 41350472 - 41350320
Alignment:
Q  307 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 406  Q
    |||||||||||||   |||||| | |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41350472 atgttaacttgtgctctaagggcatatgttaagcaaatcaaaaataaaaatatttcattaatatttatgcattcaactaattaaaagttaataaattaaa 41350373  T
Q  407 tgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtg 459  Q
    |||||||| ||||||  |||||||| |||||| |||||||| |||||||||||    
T  41350372 tgcaatacacgaattttaacaaaaaatttctacatttaactccttaacttgtg 41350320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 605 - 797
Target Start/End: Complemental strand, 38485997 - 38485808
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    |||||||||||| ||||||||||||| || | | |||  ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  38485997 tcaggtctctgctcaagacgaacagagactggtgttacagaaagtataaactaaggcgtcgtaaataggcggaacacccgaaaacaaacaccaacaaaaa 38485898  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaa 797  Q
     | | |||||||||||||||||||  |||||| ||| |||| |||||||   |  ||||||||||||| |||| |||||||||||||||||||    
T  38485897 aaactctgcgatcaacacccataagtacaacatccagcaaactaaacat---cttctaaaactgactcctatagttaccaaccactgaaaaaa 38485808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 606 - 754
Target Start/End: Complemental strand, 9350143 - 9349995
Alignment:
Q  606 caggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaac 705  Q
    ||||||||||||||||||||||||| | || | |||   ||||||||||| |||||||||||||||||||||||||| | ||| || |||||||||| ||    
T  9350143 caggtctctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaaggcgccgtatataggcggaacacctggaaaaaatcaccaacaaagac 9350044  T
Q  706 acccctgcgatcaacacccataacgacaacacccaccaaaataaacatc 754  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  9350043 acccctgcaatcaacccccataaggacaacacccaccaaaataaacatc 9349995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 42121492 - 42121381
Alignment:
Q  296 aaaactgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 395  Q
    |||| |||||||||||||||| || | |||||| ||||||||||||| |||||| |||||| |||   ||||  ||||| ||||||| |||| ||||||     
T  42121492 aaaaatgggtcatgttaacttatgccctaagggcacatgttaagcaacccaaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtg 42121393  T
Q  396 aataaattaaat 407  Q
    || |||||||||    
T  42121392 aaaaaattaaat 42121381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 657 - 696
Target Start/End: Complemental strand, 3478728 - 3478689
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  3478728 aaggcgccgtatataggcggaacacccgaaaataaacacc 3478689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 37708441 - 37708544
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 403  Q
    |||||||||||||||| | |||||| | |||||||| ||  || ||||||||| ||| | ||||  ||||||||||||| |||| |||||| || |||||    
T  37708441 gtcatgttaacttgtgccgtaagggcagatgttaagtaactcagaaatagaaacattcccttaaattttgtgcattcaattaatcaaaagtaaaaaaatt 37708540  T
Q  404 aaat 407  Q
    ||||    
T  37708541 aaat 37708544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 772
Target Start/End: Original strand, 28534274 - 28534330
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactc 772  Q
    ||||||||| | | ||||||||||||||||||||||||||||  ||||||| |||||    
T  28534274 tcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactc 28534330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 688
Target Start/End: Original strand, 28534206 - 28534237
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaa 688  Q
    ||||||||||||||||||||||||||||||||    
T  28534206 aaggcgccgtatataggcggaacacccgaaaa 28534237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 33645162 - 33645217
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaa 356  Q
    ||||||||| ||||||||| | |||||| ||||||||| ||| |||||||||||||    
T  33645162 tgggtcatgctaacttgtgacctaagggcacatgttaaacaacccaaaaatagaaa 33645217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 694
Target Start/End: Original strand, 16828805 - 16828839
Alignment:
Q  660 gcgccgtatataggcggaacacccgaaaacaaaca 694  Q
    ||||||||||||||||||||||||||||| |||||    
T  16828805 gcgccgtatataggcggaacacccgaaaataaaca 16828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 774
Target Start/End: Complemental strand, 23983540 - 23983482
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcat 774  Q
    ||||||| ||| | ||||||||||||||||||||||| ||||  ||||||| |||||||    
T  23983540 tcaacacacatgaggacaacacccaccaaaataaacaccaccacctaaaacagactcat 23983482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 609 - 777
Target Start/End: Original strand, 30235769 - 30235938
Alignment:
Q  609 gtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacac 707  Q
    |||||||| |||||| |||| | |||| | |||  ||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||    
T  30235769 gtctctgcgcaagacaaacaaagaccggtgttacagaaggtacaaactaaaggctccgtatataggcggaacatccgaaaacaaacaccaacaaagacac 30235868  T
Q  708 ccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatata 777  Q
    || ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  30235869 ccttgcgatcaacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgactcctata 30235938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 2147872 - 2148026
Alignment:
Q  310 ttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaat---taaaagttaataaattaaa 406  Q
    |||||||||||  |||||| ||||||||||||| |  ||||||||||||| |||||||||||||||||||||||||||   |||||||||| ||||||||    
T  2147872 ttaacttgtgttttaagggcacatgttaagcaatctcaaaatagaaatatctcattaatatttgtgcattcaactaattactaaaagttaacaaattaaa 2147971  T
Q  407 tgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtgcc 461  Q
    |||||||  |||||||||||||||||||||||  ||||||| |||||||||||||    
T  2147972 tgcaatatacgaattccaacaaaaagtttctacgtttaactccttaacttgtgcc 2148026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 609 - 796
Target Start/End: Complemental strand, 10552696 - 10552517
Alignment:
Q  609 gtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacc 708  Q
    |||||||||||||||||||||| |  | |||||   | ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     |||    
T  10552696 gtctctgcacaagacgaacagagaatggtattagaaagagtaccaactaaagcgccgtatataggcggaacatccgaaaacaaacaccaaca-----acc 10552602  T
Q  709 cctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaa 796  Q
    ||||| |||||||||| ||| ||||||||| ||||||||||||||   || |||||||||||||||||||| | |||||||| |||||    
T  10552601 cctgcaatcaacacccttaaggacaacaccaaccaaaataaacat---cccctaaaactgactcatatactaagcaaccactaaaaaa 10552517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 335 - 447
Target Start/End: Original strand, 38824638 - 38824751
Alignment:
Q  335 ttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatt-aaaagttaataaattaaatgcaatacgcgaattccaacaaaaagt 433  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||  ||||||||||||||| |    
T  38824638 ttaagcaaatcaaaaatagaaatatttcattaataattgtgcattcaactaattaaaaagttaacaaattaaatacaatacatgaattccaacaaaaaat 38824737  T
Q  434 ttctatatttaact 447  Q
    ||||| ||||||||    
T  38824738 ttctacatttaact 38824751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 613 - 722
Target Start/End: Original strand, 5214964 - 5215073
Alignment:
Q  613 ctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctg 712  Q
    ||||| |||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||     
T  5214964 ctgcataagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatataggcgaaacacccgaaaacaaactctaacaaagacaccccta 5215063  T
Q  713 cgatcaacac 722  Q
    ||||||||||    
T  5215064 cgatcaacac 5215073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 605 - 796
Target Start/End: Complemental strand, 35062891 - 35062707
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    ||||||||||||||||||| |||||| | |  | |||  |||| |||||| |||  |||||||||||| | |||||||||||||||||||||||||        
T  35062891 tcaggtctctgcacaagacaaacagagaacagtgttacagaaaatacaaattaatacgccgtatatagacagaacacccgaaaacaaacaccaaca---- 35062796  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaa 796  Q
     |||||||||||||||||||| || |||| ||| |||||||| ||| | | ||| |||||||||||||||||||| |||||||||| |||||    
T  35062795 -acccctgcgatcaacacccaaaaggacatcacacaccaaaa-aaaaacctccc-ctaaaactgactcatatactaaccaaccactaaaaaa 35062707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 719 - 808
Target Start/End: Original strand, 41791017 - 41791105
Alignment:
Q  719 acacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaactgacattcat 808  Q
    |||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| |||||||||    
T  41791017 acactcataaggacaacccccaccaaaataaacatcaccccctaaaactgactcatatacttactgaccactgaaaaaac-gacattcat 41791105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 439
Target Start/End: Original strand, 11323098 - 11323233
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 403  Q
    |||||| ||||||||||| ||| || |||| ||||||||  |||||||| | ||||||  ||||||||||||||||||| ||||| |||||| | |||||    
T  11323098 gtcatgctaacttgtgtcttaaaggcacatattaagcaacacaaaaataaagatatttttttaatatttgtgcattcaattaattcaaagttgaaaaatt 11323197  T
Q  404 aaatgcaatacgcgaattccaacaaaaagtttctat 439  Q
    |||| |||| |  ||||| ||||||||| |||||||    
T  11323198 aaatccaatgcatgaatttcaacaaaaaatttctat 11323233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 16612229 - 16612319
Alignment:
Q  355 aatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagtttctatatttaa 445  Q
    |||||| |||||||||||||||||| ||| ||||||||||||| |||||||||| ||||| | ||||| |||||||| |||||| ||||||    
T  16612229 aatattccattaatatttgtgcatttaacgaattaaaagttaacaaattaaatgtaatacacaaattctaacaaaaaatttctacatttaa 16612319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 665 - 783
Target Start/End: Original strand, 32945407 - 32945522
Alignment:
Q  665 gtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacga-caacacccaccaaaataaacatcacccactaa 763  Q
    ||||||||||||||||||||||||||||    | | || |||||| |||||||||||| ||||| || ||||| |||||||||||||||||| ||  |||    
T  32945407 gtatataggcggaacacccgaaaacaaa----acctaagacacccttgcgatcaacactcataaggatcaacatccaccaaaataaacatcagcccttaa 32945502  T
Q  764 aactgactcatatacttacc 783  Q
    ||||||||| ||||| ||||    
T  32945503 aactgactcctatacctacc 32945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 323 - 456
Target Start/End: Complemental strand, 24993737 - 24993603
Alignment:
Q  323 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt-aataaattaaatgcaatacgcgaatt 421  Q
    |||||| ||||||||| |||  ||||||||||| |||||| |||| |||| ||| ||||| |||||||||||| || |||||||||  ||| | | ||||    
T  24993737 taagggcacatgttaaacaactcaaaaatagaattatttccttaaaatttatgctttcaattaattaaaagttaaaaaaattaaatttaatgcacaaatt 24993638  T
Q  422 ccaacaaaaagtttctatatttaactacttaactt 456  Q
    |||| |||||||||||| |||| |||  |||||||    
T  24993637 ccaataaaaagtttctacatttgactcattaactt 24993603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 14055943 - 14055842
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatt-aaaagttaataaat 402  Q
    |||||||||||||||| ||| |||| ||||||||||||| ||   |||| || |||| | |||| |||||| ||||||| ||||| ||||||||| ||||    
T  14055943 gtcatgttaacttgtgccattagggcacatgttaagcaaccc---aataaaattattcccttaagatttgtacattcaattaattaaaaagttaaaaaat 14055847  T
Q  403 taaat 407  Q
    |||||    
T  14055846 taaat 14055842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 41862689 - 41862585
Alignment:
Q  330 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaa 429  Q
    ||||||||| |||  ||||||||  |||||||| ||||||||| | |||| || ||||||||| |||| | ||||||| |||||  |||||| |||||||    
T  41862689 acatgttaaacaactcaaaaataagaatatttctttaatatttatacatttaattaattaaaa-ttaaaatattaaattcaatattcgaatttcaacaaa 41862591  T
Q  430 aagttt 435  Q
    ||||||    
T  41862590 aagttt 41862585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 446
Target Start/End: Complemental strand, 2627007 - 2626903
Alignment:
Q  342 aaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagtttctatat 441  Q
    |||||||||||||||||||   |||||| || ||||||||| |||||||||||||  || || ||| |||| | | |||| |||||||||  ||||| ||    
T  2627007 aaccaaaaatagaaatattcttttaatacttatgcattcaattaattaaaagttataaagttgaattcaatgcacaaatttcaacaaaaaaattctacat 2626908  T
Q  442 ttaac 446  Q
    |||||    
T  2626907 ttaac 2626903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 6530476 - 6530428
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaa 350  Q
    |||||||||||||||||||| |||||  ||||||||||||| |||||||    
T  6530476 gggtcatgttaacttgtgtcctaaggacacatgttaagcaacccaaaaa 6530428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 757
Target Start/End: Original strand, 25184905 - 25184946
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacc 757  Q
    ||||||| ||| | ||||||||||||||||||||||||||||    
T  25184905 tcaacactcatgaggacaacacccaccaaaataaacatcacc 25184946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 644 - 797
Target Start/End: Complemental strand, 18681471 - 18681318
Alignment:
Q  644 gaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccacca 743  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||| | ||| |||| ||||||||||||||  ||||||||| | |    
T  18681471 gaaagtacaaactaaggtgtcgtatataggcggaacacccgaaaacaaatactaacaaagaaacctctgcaatcaacacccataagaacaacaccctcta 18681372  T
Q  744 aaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaa 797  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  18681371 aaataaacatcaccccctaaaactgactcctatacttaccaaccactaaaaaaa 18681318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 607 - 798
Target Start/End: Original strand, 31902063 - 31902253
Alignment:
Q  607 aggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaaca 706  Q
    |||||||||| ||||||||||||| |||| | |||  |||||||||||  || ||||||||||||||  |||||||||||||| ||||||||| ||  ||    
T  31902063 aggtctctgcccaagacgaacagagaccggtgttacagaaagtacaaatcaaagcgccgtatataggtagaacacccgaaaactaacaccaaccaaggca 31902162  T
Q  707 cccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaac 798  Q
     |||||||||||||||| |||| ||||||  | | |||||||||||||| ||  |||||||||||| |||||| |||||||| |||||||||    
T  31902163 accctgcgatcaacaccaataaggacaac-tctatcaaaataaacatcaacccataaaactgactcctatactaaccaaccagtgaaaaaac 31902253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 334 - 457
Target Start/End: Original strand, 2733163 - 2733286
Alignment:
Q  334 gttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagt 433  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||| | ||||||||||||||||||    
T  2733163 gttaatcaatcccaaaatagaaatatttcattaatatttgtgcatttaactaaataaaatataaaaaattaaatgcaatgcacgaattccaacaaaaagt 2733262  T
Q  434 ttctatatttaactacttaacttg 457  Q
    ||||  ||||||||  ||||||||    
T  2733263 ttctgcatttaacttattaacttg 2733286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 665 - 752
Target Start/End: Original strand, 29043993 - 29044080
Alignment:
Q  665 gtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaaca 752  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  29043993 gtatataggcggaacacctgaaaacaaaaaccaacaaagacacccctgcgatcaacacccaaaagtacatcacccaccaaaataaaca 29044080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 675 - 797
Target Start/End: Original strand, 915159 - 915280
Alignment:
Q  675 ggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcat 774  Q
    ||||||||||||||||||||| |||||| |||||||| || ||| ||||||||| ||||||||  |||||||||||||||| || |||||| ||| || |    
T  915159 ggaacacccgaaaacaaacactaacaaagacacccctacg-tcaccacccataaggacaacacttaccaaaataaacatcatcccctaaaagtgattcct 915257  T
Q  775 atacttaccaaccactgaaaaaa 797  Q
      |||| || |||||||||||||    
T  915258 gaacttgcctaccactgaaaaaa 915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 605 - 728
Target Start/End: Original strand, 6173866 - 6173990
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaagg-cgccgtatataggcggaacacccgaaaacaaacaccaacaaaa 703  Q
    |||| |||||||||||||||||| || |||  | |||  ||||||||||||||| | |  |||||||||| ||||||||| |||||||||||||| | |     
T  6173866 tcagatctctgcacaagacgaactgagaccagtgttacggaaagtacaaactaaagacatcgtatataggtggaacacccaaaaacaaacaccaaaagag 6173965  T
Q  704 acacccctgcgatcaacacccataa 728  Q
    ||||||||||||||| |||||||||    
T  6173966 acacccctgcgatcagcacccataa 6173990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 607 - 796
Target Start/End: Complemental strand, 9926635 - 9926463
Alignment:
Q  607 aggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaaca 706  Q
    |||||||||||||||||||||||| || | | |||   |||||||||| |||||| |||||||||| |||||||| |||||| ||||||||||||| |||    
T  9926635 aggtctctgcacaagacgaacagagacgg-tgttacaaaaagtacaaa-taaggctccgtatatagacggaacactcgaaaataaacaccaacaaataca 9926538  T
Q  707 cccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccac-taaaactgactcatatacttaccaaccactgaaaaa 796  Q
    ||| ||| |||||||||||               |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  9926537 ccc-tgccatcaacaccca---------------ccaaaataaacatcacccgcctaaaactgactcctatacttaccgaccactgaaaaa 9926463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 4282933 - 4282841
Alignment:
Q  320 tcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaat 412  Q
    ||||||||| |||||||| |||| ||||||||| |||||||   |||| ||||||  |||||| |||||||||||||| ||||||||| ||||    
T  4282933 tcataagggaacatgttatgcaacccaaaaataaaaatattcttttaaaatttgtatattcaattaattaaaagttaaaaaattaaattcaat 4282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 41464061 - 41464165
Alignment:
Q  303 ggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaataaa 401  Q
    |||||||| ||||||||||||||||| |||||||||  || |||||| || ||||||| || | ||| ||||||||||||| |||| |||||||||  ||    
T  41464061 ggtcatgtaaacttgtgtcataagggcacatgttaataaatccaaaagtaaaaatattctcttgaat-tttgtgcattcaattaatcaaaagttaaagaa 41464159  T
Q  402 ttaaat 407  Q
    ||||||    
T  41464160 ttaaat 41464165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 18734240 - 18734312
Alignment:
Q  307 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcatt 379  Q
    ||||||||||||||| |||||| |||||| |||||| |  ||||||||||||||  |||||||||||| ||||    
T  18734240 atgttaacttgtgtcgtaagggcacatgtcaagcaatcttaaaatagaaatattctattaatatttgttcatt 18734312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 711
Target Start/End: Original strand, 22884768 - 22884870
Alignment:
Q  610 tctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacc 708  Q
    ||||||| ||||||||||| | |||||   ||| || | |||||||||| |||| ||||||||||||||||||||||||| |||| |||   ||||||||    
T  22884768 tctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccatacaaaacacc 22884867  T
Q  709 cct 711  Q
    |||    
T  22884868 cct 22884870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 44151465 - 44151570
Alignment:
Q  307 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatattt-cattaatatttgtgcattcaactaattaaaagttaataaattaa 405  Q
    ||||||||||||||| |||||  || |||||||||  | ||||||||| |||||| | |||||| |||| |||||||  ||||||||||||| |||||||    
T  44151465 atgttaacttgtgtcctaaggacacttgttaagcaccctaaaaatagatatatttcccttaatacttgtacattcaatcaattaaaagttaa-aaattaa 44151563  T
Q  406 atgcaat 412  Q
    || ||||    
T  44151564 attcaat 44151570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 696
Target Start/End: Original strand, 24165886 - 24165917
Alignment:
Q  665 gtatataggcggaacacccgaaaacaaacacc 696  Q
    ||||||||||||||||||||||||||||||||    
T  24165886 gtatataggcggaacacccgaaaacaaacacc 24165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 33788279 - 33788358
Alignment:
Q  610 tctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaa 688  Q
    |||||||  |||||||||||| |||| |  || ||| | |||||||||| ||||||||||||| ||||||||||||||||    
T  33788279 tctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaa 33788358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 5559746 - 5559661
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatta 389  Q
    ||||||||||||||||   |||||| |||||||||||||  || ||||||||||| |   |||| ||||||||||| || ||||||    
T  5559746 gtcatgttaacttgtgctctaagggcacatgttaagcaacacagaaatagaaatagtctcttaaaatttgtgcatttaattaatta 5559661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 757
Target Start/End: Original strand, 16952129 - 16952169
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacc 757  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  16952129 tcaacacccatgacgacaacaccca-caaaataaacatcacc 16952169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 757
Target Start/End: Original strand, 17022794 - 17022834
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacc 757  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  17022794 tcaacacccatgacgacaacaccca-caaaataaacatcacc 17022834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 757
Target Start/End: Original strand, 17060100 - 17060140
Alignment:
Q  716 tcaacacccataacgacaacacccaccaaaataaacatcacc 757  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  17060100 tcaacacccatgacgacaacaccca-caaaataaacatcacc 17060140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 36528514 - 36528477
Alignment:
Q  305 tcatgttaacttgtgtcataagggtacatgttaagcaa 342  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  36528514 tcatgttaacttgtgtccttagggtacatgttaagcaa 36528477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 610 - 808
Target Start/End: Complemental strand, 12794544 - 12794344
Alignment:
Q  610 tctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacc 708  Q
    |||||||| |||| ||||||| |||||| || | ||| ||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||| ||||     
T  12794544 tctctgcataagatgaacagagaccgatgttttagaaggtacaaactaaaggcgccgtatatagacggaacatccgaaaacgaacaccaacaaagacaca 12794445  T
Q  709 cctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaa--ctgactcatatacttaccaaccactgaaaaaactgacattc 806  Q
     |||||||||||||||| || ||||||| ||||||||||||||||||| |  |||||  ||||||| |||||||| | |||||||||||||| |||||||    
T  12794444 tctgcgatcaacacccaaaaggacaacatccaccaaaataaacatcacaccttaaaacgctgactcctatacttatcgaccactgaaaaaac-gacattc 12794346  T
Q  807 at 808  Q
    ||    
T  12794345 at 12794344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 645 - 798
Target Start/End: Complemental strand, 27774986 - 27774840
Alignment:
Q  645 aaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaa 744  Q
    |||||||||||||||||| |||||||||  |||||| || |||||||||||||||||| |||| ||| |||||||||||||     ||||||||||||||    
T  27774986 aaagtacaaactaaggcgtcgtatatagatggaacatccaaaaacaaacaccaacaaagacactcctacgatcaacaccca-----acaacacccaccaa 27774892  T
Q  745 aataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaac 798  Q
    |||||||||| || |  ||||||||||  |||| ||||||||||||||||||||    
T  27774891 aataaacatccccta--aaaactgacttctatatttaccaaccactgaaaaaac 27774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 657 - 754
Target Start/End: Original strand, 6946871 - 6946969
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaa-caccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatc 754  Q
    ||||||||||||||||  ||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  6946871 aaggcgccgtatatagatggaacactcgaaaacaaaacaccaacaaagacacccttgcgatcaacacccataaggacaaaacccaccaaaataaacatc 6946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 301 - 447
Target Start/End: Complemental strand, 22531018 - 22530872
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 400  Q
    |||||||||||||||| |||| ||||   ||||||||||||| ||||||||  ||||||||||| |||| || || ||| || |||||||||||||| ||    
T  22531018 tgggtcatgttaacttttgtcctaagaacacatgttaagcaatccaaaaatgaaaatatttcatcaatacttatgaattaaattaattaaaagttaaaaa 22530919  T
Q  401 attaaatgcaatacgcgaattccaacaaaaagtttctatatttaact 447  Q
    ||||||| |||| | | | ||| ||||||||||||||| ||||||||    
T  22530918 attaaattcaatgcacaagttcgaacaaaaagtttctacatttaact 22530872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 21970957 - 21970855
Alignment:
Q  303 ggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaat 402  Q
    ||||||| ||||||||| | ||| || |||| |||||||| | ||||||| ||||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  21970957 ggtcatgctaacttgtgccctaaaggcacatattaagcaatcaaaaaataaaaatatttctttaagatttgtgcattcaattaattaaaagttaaaaaat 21970858  T
Q  403 taa 405  Q
    |||    
T  21970857 taa 21970855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 664 - 772
Target Start/End: Complemental strand, 9224305 - 9224200
Alignment:
Q  664 cgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaa 763  Q
    |||||||||  |||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||| |   | ||||| ||||||||||||  ||| ||||    
T  9224305 cgtatatagaaggaacacccgaaaataaacaccaacaaagacatccctgcgatcaac-cccataagggataaacccatcaaaataaacat--ccccctaa 9224209  T
Q  764 aactgactc 772  Q
    |||||||||    
T  9224208 aactgactc 9224200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 742
Target Start/End: Original strand, 26534433 - 26534517
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccacc 742  Q
    |||||| ||||||||||||||||||| |||||| || ||||||||| |||||||||| || |||||||| || |||| ||||||||    
T  26534433 aaggcgtcgtatataggcggaacacctgaaaac-aataccaacaaagacacccctgcaataaacacccaaaaggacatcacccacc 26534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 5456531 - 5456589
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt 360  Q
    |||||||||||||||||||||||| || | ||||||||||| | |||||||||||||||    
T  5456531 gggtcatgttaacttgtgtcataaaggcaaatgttaagcaaccaaaaaatagaaatatt 5456589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 725
Target Start/End: Original strand, 26215672 - 26215792
Alignment:
Q  606 caggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    ||||||| ||||||||| ||||||| ||| || |||  |||| |||||| ||| ||| | ||||||| ||||| |||| ||||||||||||||| ||| |    
T  26215672 caggtctatgcacaagatgaacagagaccaatgttacagaaaatacaaattaaaggcactgtatatatgcggaccacctgaaaacaaacaccaataaaga 26215771  T
Q  705 cacccctgcgatcaacaccca 725  Q
     ||||| ||| ||||||||||    
T  26215772 taccccagcggtcaacaccca 26215792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 783
Target Start/End: Original strand, 26215784 - 26215835
Alignment:
Q  732 caacacccaccaaaataaacatcacccactaaaactgactcatatacttacc 783  Q
    ||||||||||||||||||||| ||||| |||||||||| || |||| |||||    
T  26215784 caacacccaccaaaataaacaacaccccctaaaactgattcctatatttacc 26215835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 533436 - 533374
Alignment:
Q  335 ttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaa 397  Q
    |||||||| | |||||||||||| |||  |||| ||||||| |||||| ||||||||||||||    
T  533436 ttaagcaacctaaaaatagaaatgtttttttaaaatttgtgtattcaattaattaaaagttaa 533374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 7509633 - 7509723
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 392  Q
    |||||||| ||||||||| | |||||| |||||||||| || |||||| |||||| || |  ||||  ||||||||||||| |||| ||||    
T  7509633 gggtcatgctaacttgtgccctaagggcacatgttaagaaacccaaaagtagaaacatgttcttaaattttgtgcattcaattaatcaaaa 7509723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 702
Target Start/End: Complemental strand, 21265369 - 21265323
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaac-aaacaccaacaaa 702  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  21265369 aaggcgccgtatatatgcgaaacacccgaaaacaaaacaccaacaaa 21265323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 694
Target Start/End: Original strand, 17278164 - 17278201
Alignment:
Q  657 aaggcgccgtatataggcggaacacccgaaaacaaaca 694  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  17278164 aaggcgtcgtatataggcggaacacccgaaaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 302 - 463
Target Start/End: Complemental strand, 2644755 - 2644594
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaa 401  Q
    |||| ||||||||||||    ||| ||||||||||||||||  | |||||||||||||| ||||||||||| |||||| || |||||||||||||| |||    
T  2644755 gggttatgttaacttgtactctaaaggtacatgttaagcaattctaaaatagaaatattccattaatatttatgcatttaagtaattaaaagttaacaaa 2644656  T
Q  402 ttaaatgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtgccct 463  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||    
T  2644655 ttaaacgcaatacacgaatttcaacaaaaagtttctacatttaactccttaacttgtgccct 2644594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 648 - 804
Target Start/End: Original strand, 43373783 - 43373943
Alignment:
Q  648 gtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaa 746  Q
    ||||||||||| ||||  ||||||||||| ||||||||||||||||  |||||||| |||||| || ||||||||| ||||| |||||||||||||||||    
T  43373783 gtacaaactaaaggcgttgtatataggcgaaacacccgaaaacaaaacccaacaaagacacccatgtgatcaacacacataaggacaacacccaccaaaa 43373882  T
Q  747 taaacatcacccactaaaactga---ctcatatacttaccaaccactgaaaaaactgacat 804  Q
    |||||||||||| ||||||||||   ||| |||||||||| |||| |||||||| ||||||    
T  43373883 taaacatcaccccctaaaactgactcctcctatacttaccgaccattgaaaaaaatgacat 43373943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 607 - 770
Target Start/End: Complemental strand, 35800872 - 35800709
Alignment:
Q  607 aggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaac 705  Q
    ||||||||| |||||||||||||| || ||| |||  ||||||||||| ||| ||||| |||||||| |||||||||  ||||||||||||||| ||||     
T  35800872 aggtctctgtacaagacgaacagagactgatgttaaagaaagtacaaaataacggcgctgtatatagacggaacaccgaaaaacaaacaccaacgaaaat 35800773  T
Q  706 acccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgac 770  Q
    |||| |||||||||||||||||| || |||||||| |||||||||| |||| | |||||| ||||    
T  35800772 acccatgcgatcaacacccataa-gaaaacacccatcaaaataaacctcactccctaaaagtgac 35800709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 606 - 771
Target Start/End: Complemental strand, 19432469 - 19432304
Alignment:
Q  606 caggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    ||||||| ||||||||||| |||||||||  | |||  ||| |||||||| || |||||||||||||| ||||||| |||||||||||  ||||||||      
T  19432469 caggtctttgcacaagacggacagataccagtgttacagaaggtacaaacaaaaggcgccgtatatagacggaacatccgaaaacaaaacccaacaaagc 19432370  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgact 771  Q
    | || |||| |||||||||||||  || |||||||||||||||||| ||||||| ||||||||||||    
T  19432369 c-cctctgccatcaacacccatagggataacacccaccaaaataaagatcaccccctaaaactgact 19432304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 645 - 749
Target Start/End: Complemental strand, 35336962 - 35336856
Alignment:
Q  645 aaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaa-caccaacaaaaacacccctgcgatcaacacccataacgacaacacccacc 742  Q
    ||||||||||| || |||||||||||||| ||||||| ||||||| ||| |||||||||| ||||   ||| |||||||| | ||| |||||||||||||    
T  35336962 aaagtacaaacaaaaggcgccgtatatagacggaacatccgaaaataaaacaccaacaaagacacatatgcaatcaacactcgtaaggacaacacccacc 35336863  T
Q  743 aaaataa 749  Q
    |||||||    
T  35336862 aaaataa 35336856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 664 - 722
Target Start/End: Complemental strand, 43077339 - 43077281
Alignment:
Q  664 cgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccctgcgatcaacac 722  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  43077339 cgtatataggcagaacacctgaaaataaacaccaacaaagacacccctgcgatcaacac 43077281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 50685759 - 50685654
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaa 401  Q
    ||||||||||||| ||||   |||||| |||| ||||||||  |||||||||||||||||  || |  ||||||||||||| ||||||||||| || |||    
T  50685759 gggtcatgttaacctgtgctctaagggcacattttaagcaattcaaaaatagaaatattttcttgaattttgtgcattcaattaattaaaagtaaaaaaa 50685660  T
Q  402 ttaaat 407  Q
    ||||||    
T  50685659 ttaaat 50685654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 14112173 - 14112278
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 400  Q
    ||||||||||||||||||||| |||||  ||| ||||||||| |||||| ||||||||||   ||||  ||| |||||||||||| | ||||| ||| ||    
T  14112173 tgggtcatgttaacttgtgtcttaaggacacaagttaagcaacccaaaagtagaaatattctcttaagttttatgcattcaactattcaaaag-taaaaa 14112271  T
Q  401 attaaat 407  Q
    |||||||    
T  14112272 attaaat 14112278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 796
Target Start/End: Original strand, 24739938 - 24740044
Alignment:
Q  690 aaacaccaacaaaaacacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccac 789  Q
    ||||||||| |||||||||| |||||||| ||| ||||| || ||||||||| |||||||||||| ||  |||||| |||||  |||| | | | |||||    
T  24739938 aaacaccaataaaaacacccttgcgatcaccactcataaggataacacccactaaaataaacatccccacctaaaaatgacttgtatattaatcgaccac 24740037  T
Q  790 tgaaaaa 796  Q
    |||||||    
T  24740038 tgaaaaa 24740044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 54997695 - 54997733
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaa 342  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  54997695 gtcatgttaacttgtgtcattagggcacatgttaagcaa 54997733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 605 - 798
Target Start/End: Complemental strand, 31722102 - 31721926
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    |||||||| ||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||      
T  31722102 tcaggtctttgcacaagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatatagacggaacacccgaaaacaaacactaacaaagg 31722003  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaac 798  Q
    ||||| || ||||||||               |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  31722002 cacccatgtgatcaaca---------------cccaccaaaataaacatcacc--ctaaaactgactcctatacttaccaaccactgaaaaaac 31721926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 605 - 797
Target Start/End: Complemental strand, 24436259 - 24436064
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    |||||||||||||||||||||| | | |||| | |||| |||||||||||||||| || | ||||||| ||||||| |||||||||||||| |||||| |    
T  24436259 tcaggtctctgcacaagacgaataaagaccggtgttatggaaagtacaaactaagacgtcatatatagtcggaacatccgaaaacaaacactaacaaaga 24436160  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaaca---tcacccactaaaactgactcatatacttaccaaccactgaaaaaa 797  Q
    ||| ||| |||||||||| ||||| ||||||| |||| |||| ||| |   |||||  | ||| ||||||| || |||||||||||||||||||||    
T  24436159 cactcctacgatcaacactcataaggacaacatccacaaaaaaaaaaaaaatcacctccgaaagctgactcctaaacttaccaaccactgaaaaaa 24436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 613 - 754
Target Start/End: Complemental strand, 31742588 - 31742446
Alignment:
Q  613 ctgcacaagacgaacagataccgatattatcgaaagtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaacacccct 711  Q
    |||||||||||||||||| |||| | |||    |||||||||| || ||||||||||||||||||||||||||||||||||||||  |||| || ||| |    
T  31742588 ctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacctgcaaagactccctt 31742489  T
Q  712 gcgatcaacacccataacgacaacacccaccaaaataaacatc 754  Q
    |||||||| |||||||| ||||||||||||  |||||||||||    
T  31742488 gcgatcaaaacccataaggacaacacccactgaaataaacatc 31742446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 10655516 - 10655423
Alignment:
Q  304 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaa 397  Q
    |||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  10655516 gtcatgctaacttgtgtcctaagagtacatgttaagcaatccaaaaatagaaatatttccttaatacttgtgcattcaattaattaaaagttaa 10655423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 605 - 798
Target Start/End: Complemental strand, 36979344 - 36979156
Alignment:
Q  605 tcaggtctctgcacaagacgaacagataccgatattatcgaaagtacaaactaaggcgccgtatataggcggaacacccgaaaacaaacaccaacaaaaa 704  Q
    |||||||||||||||||||||||||| |||| | |||  |||| || ||||||||| | |||||||| ||||||| |||| ||||||||          |    
T  36979344 tcaggtctctgcacaagacgaacagagaccggtgttaaagaaaatataaactaaggtgtcgtatatatgcggaacgcccggaaacaaac----------a 36979255  T
Q  705 cacccctgcgatcaacacccataacgacaacacccaccaaaataaacatcacc-----cactaaaactgactcatatacttaccaaccactgaaaaaac 798  Q
    ||| |||| |||||||| |||||| |||||| |||| ||||||||||||| ||     |||  |||||||||| |||||||||||||||||||||||||    
T  36979254 cactcctgtgatcaacatccataaggacaactcccatcaaaataaacatccccccccacacacaaactgactcttatacttaccaaccactgaaaaaac 36979156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 5683387 - 5683483
Alignment:
Q  310 ttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 406  Q
    ||||||| |||| ||||||||||| |||||||| | ||| |||||||||||   ||||||||| |||||| || |||||||||||||| | ||||||    
T  5683387 ttaacttatgtcttaagggtacatattaagcaatctaaagatagaaatattctcttaatatttatgcatttaattaattaaaagttaaaatattaaa 5683483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 12289170 - 12289065
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaataa 400  Q
    ||||||| |||||||||| | |||||| ||||||||||||| |||||| |||||||||| || | ||| |||||| |||||| |||| |||||||||  |    
T  12289170 gggtcatattaacttgtgccctaagggcacatgttaagcaatccaaaagtagaaatattctcttgaat-tttgtgtattcaattaatcaaaagttaaaga 12289072  T
Q  401 attaaat 407  Q
    |||||||    
T  12289071 attaaat 12289065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 29429777 - 29429683
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 395  Q
    ||||||||||||||||||| | | |||| ||||||||||||| |||||| |||||||  ||  ||||  |||||||||| || ||||||||||||    
T  29429777 tgggtcatgttaacttgtgcccttagggcacatgttaagcaacccaaaagtagaaattgtttcttaaattttgtgcatttaattaattaaaagtt 29429683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 696
Target Start/End: Original strand, 13953939 - 13953989
Alignment:
Q  647 agtacaaactaa-ggcgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  13953939 agtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacacc 13953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Original strand, 24071954 - 24072000
Alignment:
Q  649 tacaaactaagg-cgccgtatataggcggaacacccgaaaacaaaca 694  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||    
T  24071954 tacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 696
Target Start/End: Complemental strand, 30097721 - 30097673
Alignment:
Q  649 tacaaactaagg-cgccgtatataggcggaacacccgaaaacaaacacc 696  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||||    
T  30097721 tacaaactaaagacgccgtatataggcggaacacccgaaaataaacacc 30097673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 141478 - 141372
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaata 399  Q
    |||||||||||||||||||   |||||   |||||||||||| || ||| |||||||||| || | ||| ||||||||||||| |||| |||||||||      
T  141478 tgggtcatgttaacttgtgctctaaggacgcatgttaagcaatcccaaagtagaaatattctcttgaat-tttgtgcattcaattaatcaaaagttaaag 141380  T
Q  400 aattaaat 407  Q
    ||||||||    
T  141379 aattaaat 141372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 33741597 - 33741635
Alignment:
Q  301 tgggtcatgttaacttgtgtcataagggtacatgttaag 339  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  33741597 tgggtcatgttaacttgtgtcataagggaacaagttaag 33741635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 796
Target Start/End: Original strand, 39024193 - 39024272
Alignment:
Q  715 atcaacacccataacgacaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaa 796  Q
    |||||||||||||| |||||||||||||||||||  |||||  ||  |||| |||||| |||||| ||| |||| |||||||    
T  39024193 atcaacacccataaggacaacacccaccaaaatatccatca--cataaaaattgactcttatactaaccgaccattgaaaaa 39024272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 12199365 - 12199290
Alignment:
Q  330 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaat 407  Q
    |||||||||||||   |||| || ||||||||  |||| |||||||||||||| |||||||||||||| |||||||||    
T  12199365 acatgttaagcaatttaaaattaaaaatatttt-ttaaaatttgtgcattcaattaattaaaagttaa-aaattaaat 12199290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 14512841 - 14512934
Alignment:
Q  302 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 395  Q
    ||||| || ||||||||||   || ||||||  |||||||| | || |||||||||||||| |||||| || |||||||||  |||||||||||    
T  14512841 gggtcctgctaacttgtgtttgaaaggtacaaattaagcaatcaaataatagaaatatttccttaatacttatgcattcaatcaattaaaagtt 14512934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 311 - 443
Target Start/End: Original strand, 508803 - 508935
Alignment:
Q  311 taacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcat-taatatttgtgcattcaactaattaaaagttaataaattaaatgc 409  Q
    |||||||| |||||| |  | ||||||| ||| | ||||||||||||||| ||| ||| ||||||||||| || |||  ||||||||| |||||||||      
T  508803 taacttgtttcataacgacaaatgttaaacaatctaaaaatagaaatatt-catataagatttgtgcattgaattaagcaaaagttaaaaaattaaattt 508901  T
Q  410 aatacgcgaattccaacaaaaagtttctatattt 443  Q
    ||||   |||||||||||||||||||||| ||||    
T  508902 aatatctgaattccaacaaaaagtttctacattt 508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 711
Target Start/End: Original strand, 1353 - 1408
Alignment:
Q  657 aaggcgccgtatataggcggaacacccg-aaaacaaacaccaacaaaaacacccct 711  Q
    |||||||||||||||||| ||||||||| |||| ||||||||  ||||||||||||    
T  1353 aaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccct 1408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 136 - 97
Alignment:
Q  325 agggtacatgttaagcaaaccaaaaatagaaatatttcat 364  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  136 agggtacatgttaaggaatccaaaaatagaaatatttcat 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1308 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 1442 - 1403
Alignment:
Q  325 agggtacatgttaagcaaaccaaaaatagaaatatttcat 364  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  1442 agggtacatgttaaggaatccaaaaatagaaatatttcat 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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