View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_21 (Length: 403)
Name: NF12029_low_21
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 47430415 - 47430068
Alignment:
| Q |
12 |
gagagggatttaagcacctttcaaatagtcaaagaggctcccttcagcactagtcaagtatagcaatagtatggaaaccacgaccaatgagaccaaaaac |
111 |
Q |
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| T |
47430415 |
gagagggatttaagcacctttcaaatagtcaaagaggctcccttcagca---gtcaagtgtagcaatagtatggaaacaacgaccaatgagaccaaaaac |
47430319 |
T |
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| Q |
112 |
ttgttggaacccatatggtaatttgtctaataact--tgatnnnnnnnncaaattgattttggtttgtggcaaatttccaatatatactgcaagatggag |
209 |
Q |
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| T |
47430318 |
ttgttggaacccatatggtaacttttctaataactcttgataaaaaa--caaattgattttggtttgtggcaaatttccaatatatactgcaagatggag |
47430221 |
T |
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| Q |
210 |
tactcaattattaaagttttgtctagggttacaattcttgcattccatgagcagacctttgagttttgcaaatatgaggggtcaattatttaagtttgat |
309 |
Q |
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| T |
47430220 |
tactcaattattaaagttttgtctagggttacaattcttgcattccatgagcagacctttgagttttgcaattatgaggggtcaattatttaagtttgat |
47430121 |
T |
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| Q |
310 |
tttattgattgaaaaatctatgacataattttattttttatcaactcctttgt |
362 |
Q |
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| T |
47430120 |
tttattgattgaaaaatctatgacataattttattttttatcaactcctttgt |
47430068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 391
Target Start/End: Complemental strand, 47430032 - 47430003
Alignment:
| Q |
362 |
tcaagttatagaaggagcaatgtgaatatt |
391 |
Q |
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| T |
47430032 |
tcaagttatagaaggagcaatgtgaatatt |
47430003 |
T |
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