View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_low_22 (Length: 401)
Name: NF12029_low_22
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 5374204 - 5374596
Alignment:
| Q |
9 |
agcacagaccaaaaacacatacataattcacatggacaaatccaccatgccagaaacattcactgatcaccttaactggttcgatacatcgctaaaatca |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374204 |
agcacaaaccaaaaacacatacataattcacatggacaaatccaccatgccagaaacattcactgatcaccttaactggttcgatacatcgctaaaatca |
5374303 |
T |
|
| Q |
109 |
gtatcagaaacagcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374304 |
gtatcagaaacagcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagc |
5374403 |
T |
|
| Q |
209 |
ccggaattctcgatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374404 |
ccggaattctcgatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctca |
5374503 |
T |
|
| Q |
309 |
ctctagacaacaaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374504 |
ctctagacaacaaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaat |
5374596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 392
Target Start/End: Complemental strand, 47368354 - 47367987
Alignment:
| Q |
25 |
acatacataattcacatggacaaatccaccatgccagaaacattcactgatcaccttaactggttcgatacatcgctaaaatcagtatcagaaacagcag |
124 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| || ||| ||||| || | |||| ||| |||| ||||||||||||||||| || |||| |
|
|
| T |
47368354 |
acatacataattcacatggacaagttcaacatgccagcaagtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcag |
47368255 |
T |
|
| Q |
125 |
agattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgt |
224 |
Q |
| |
|
||| | || || |||||||| |||||||||| | ||||||||| ||||||| |||||||| || ||| |||| || || ||||||||| || |
|
|
| T |
47368254 |
agacgatgtatacctacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggt |
47368155 |
T |
|
| Q |
225 |
tatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagt |
324 |
Q |
| |
|
||| ||||| |||||||| | ||||||||||| |||||||| ||||||| || ||| ||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
47368154 |
tatccctgatgtcagatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttaccgtcctctggaaaacaaagt |
47368055 |
T |
|
| Q |
325 |
caagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggact |
392 |
Q |
| |
|
| || || |||| | ||||||| ||| ||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
47368054 |
gaggtgattgttggagtaattgacacaggtgtatggcctgaactaaaaagcttcgatgacactggact |
47367987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University