View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_low_23 (Length: 392)
Name: NF12029_low_23
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 48824846 - 48824622
Alignment:
| Q |
16 |
caaactttatatgtatcaccttctacggtaatagaagaaatacaataagaggtcagtatttccatattcacttgtcttatttaaaactcattgattttat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824846 |
caaactttatatgtatcaccttctacggtaatagaagaaatacaataagaggtcagtatttccatattcacttgtcttatttaaaactcattgattttat |
48824747 |
T |
|
| Q |
116 |
atgccatacccacatgttattttttgacaaatcatggccatattattattctgtccattaattgattttttaaccatgcatgatccctttctctaccttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824746 |
atgccatacccacatgttattttttgacaaatcatggccatattattattctgtccattaattgattttttaaccatgcatgatccctttctctaccttc |
48824647 |
T |
|
| Q |
216 |
ctgattttgcctttgtcttaaaacg |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48824646 |
ctgattttgcctttgtcttaaaacg |
48824622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 48824569 - 48824416
Alignment:
| Q |
239 |
cgataagatttctgaaaataagtatttaagtgttactttctttggttaacgtgtgatcaagtatcgcttggcttaacttaataagctaatcacacactga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824569 |
cgataagatttctgaaaataagtatttaagtgttactttctttggttaacgtgtgatcaagtatcgcttggcttaacttaataagctaatcacacactga |
48824470 |
T |
|
| Q |
339 |
ccatatatcttagttaatgttactccttcctttctaatacaactgccttatcct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48824469 |
ccatatatcttagttaatgttactccttcctttctaatacaactgacttatcct |
48824416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University