View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_low_24 (Length: 382)
Name: NF12029_low_24
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_24 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 20435595 - 20435244
Alignment:
| Q |
16 |
cagtattgttcctcttaagacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20435595 |
cagtattgttcctcttaagacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcagg |
20435496 |
T |
|
| Q |
116 |
ctgaacaataatcgctttttctttcttcaaaagaagtgagtaaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgat |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20435495 |
ctgaacaataatagctttttctttcttcaaaagaagtgagtatccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgat |
20435396 |
T |
|
| Q |
216 |
tccacaatctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaataaaatgtttgtgatcctcaggaattagtcctttagcagatggcatga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
20435395 |
tccacaatctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaatgaaatgtttgtgatcctcaggaattagtcctttggcagatggcatga |
20435296 |
T |
|
| Q |
316 |
ctgaatatggataagcacttttatcagctagctcaataaaagcttcacatgc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20435295 |
ctgaatatggataagcacttttatcagctagctcaataaaagcttcacatgc |
20435244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 20438087 - 20437824
Alignment:
| Q |
24 |
ttcctcttaagacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaa |
123 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||| |||| | ||||| |
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|
| T |
20438087 |
ttcctcttaaggcgcttcgcaagcgcgctaagaaaatcctgcatcaaaacacactcaaatgtaggaccatttccaatcacatccctaccaggttaaacaa |
20437988 |
T |
|
| Q |
124 |
taatcgctttttctttcttcaaaagaagtgagtaaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaat |
223 |
Q |
| |
|
| || |||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||| | || ||| ||||||| | |||||||| | || |
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|
| T |
20437987 |
tgatagctttttctttcttcagaagaagtgagtaaccaacttaactgcagtcattgaaaataggcctagtaaagaggtatgtgttggccgattcaatgat |
20437888 |
T |
|
| Q |
224 |
ctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaataaaatgtttgtgatcctca |
287 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
20437887 |
ctcggcacagaaagcagttctcactgcaccccagaatgttccaatgaaatgtttgtgatcctca |
20437824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 5331692 - 5331334
Alignment:
| Q |
16 |
cagtattgttcctcttaagacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5331692 |
cagtattgttcctcttaagacgcttcgcgagcgcgctaagaaaatccttcatcaagacacacccaaatgttggaccatttccaatcacaaccctatcagg |
5331593 |
T |
|
| Q |
116 |
ctgaacaataatcgctttttctttcttcaaaagaagtgagtaaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgat |
215 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5331592 |
ctgaacaattatagctttttctttcttcaaaagaagcgagtaaccaacagaactgtagtcattgaaaataggtccagcaaataggtatgcatcagccgat |
5331493 |
T |
|
| Q |
216 |
tccacaatctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaataaaatgtttgtgatcctcaggaattagtcctttagcagatggcatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5331492 |
tccacaatctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaataaaatgtttgtgatcctcaggaattagtcctttagcagatggcatga |
5331393 |
T |
|
| Q |
316 |
ctgaatatggataagcacttttatcagctagctcaataaaagcttcacatgcctttgct |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5331392 |
ctgaatatggataagcacttttatcagctagctcaataaaagcttcacatgcttttgct |
5331334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 373
Target Start/End: Complemental strand, 5511513 - 5511234
Alignment:
| Q |
90 |
ccatttccaatcacaaccctatcaggctgaacaataatcgctttttctttcttcaaaagaagtgagtaaccaacagaactgtaatcattgaaaataggtc |
189 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||| | |||| |
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|
| T |
5511513 |
ccatttccagtcacaaccctatcaggctgaacaatacaag-tttttctttcttcaaaag---tgagtatccaacagaactgtaatcattgaaagttggtc |
5511418 |
T |
|
| Q |
190 |
cagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactgcaccccaaaatgttccaataaaatgttt-gtgatcctcag |
288 |
Q |
| |
|
||||||||| | | || || | |||| || |||| ||| || || ||| |||| |||||| |||||||||| |||| | ||||| ||||| || || |
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|
| T |
5511417 |
cagcaaataagcaagcgtccacaaattcgacgatcttggcgcagaaagcatagctcgctgcacaccaaaatgtttcaat-gattgtttagtgattctaag |
5511319 |
T |
|
| Q |
289 |
gaattagtcctttagcagatggcatgactgaatatggataagcacttttatcagctagctcaataaaagcttcacatgcctttgc |
373 |
Q |
| |
|
| ||||||||||| ||||||| |||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
5511318 |
tagctagtcctttagaagatggcgtgactggacattgataagcacttttatcagctaaatcaataaaagcttcacatgcttttgc |
5511234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 50 - 374
Target Start/End: Original strand, 2065225 - 2065547
Alignment:
| Q |
50 |
gctaagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaataatcgctttttctttcttcaaaaga |
149 |
Q |
| |
|
||||||||||| || |||||| ||||| |||||||||||||||||||||||| || ||||||||||| |||||| || | |||| |||| ||||||||| |
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|
| T |
2065225 |
gctaagaaaattct-catcaaagcacactcaaatgtaggaccatttccaatcataatcctatcaggctaaacaattattgattttactttgttcaaaaga |
2065323 |
T |
|
| Q |
150 |
agtgagtaaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactg |
249 |
Q |
| |
|
| | |||||| |||| |||| ||||||||||| |||| ||| |||||||||||||||| ||||||| | || |||||| |||| || |||| || |
|
|
| T |
2065324 |
attaagtaacgaacaaaactataatcattgaagatagtcccattaaataggtatgcatcaaccgattctatgatt--ggcacataatgtggttctcattg |
2065421 |
T |
|
| Q |
250 |
caccccaaaatgttccaataaaatgtttgtgatcctcaggaatta-gtcctttagcagatggcatgactgaatatggataagcacttttatcagctagct |
348 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||| || ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
2065422 |
caccccaaaatatttcaacgaaatgtttgtgatcctcatgagttaagtcatttagcagatggcatggctgaatatggataagcacttttatcagctagtt |
2065521 |
T |
|
| Q |
349 |
caataaaagcttcacatgcctttgct |
374 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
2065522 |
caataaaagcttcacatgcttttgct |
2065547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 52 - 274
Target Start/End: Complemental strand, 25625112 - 25624890
Alignment:
| Q |
52 |
taagaaaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaataatcgctttttctttcttcaaaagaag |
151 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||| ||| ||||| ||||||||||| ||| |||| ||||||||||||||| |||||||| | |||||| |
|
|
| T |
25625112 |
taaggaaatcattcatcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctttctctttcttgagaagaag |
25625013 |
T |
|
| Q |
152 |
tgagtaaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactgca |
251 |
Q |
| |
|
||| || |||||||||||||| || || ||||| || || ||||| | |||||||||||| ||||| |||||||||||||| |||||||| ||||| ||| |
|
|
| T |
25625012 |
tgaatacccaacagaactgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggcacagaatgcagtactcacagca |
25624913 |
T |
|
| Q |
252 |
ccccaaaatgttccaataaaatg |
274 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
25624912 |
ccccaataagttccaatgaaatg |
25624890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 257
Target Start/End: Complemental strand, 25605475 - 25605275
Alignment:
| Q |
57 |
aaatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaataatcgctttttctttcttcaaaagaagtgagt |
156 |
Q |
| |
|
|||||||||||||| | || ||||||| ||| ||||| ||| |||||||| ||| ||||| ||||| || || || |||||||| | ||||||||| | |
|
|
| T |
25605475 |
aaatccttcatcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttctctttcttgagaagaagtgaat |
25605376 |
T |
|
| Q |
157 |
aaccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactgcacccca |
256 |
Q |
| |
|
| |||||||| ||||| ||||| ||||| || || ||||| | |||||||||||| ||||| |||||||| ||||| ||||| || ||||| |||||||| |
|
|
| T |
25605375 |
acccaacagagctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcacccca |
25605276 |
T |
|
| Q |
257 |
a |
257 |
Q |
| |
|
| |
|
|
| T |
25605275 |
a |
25605275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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