View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_25 (Length: 352)
Name: NF12029_low_25
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 3 - 334
Target Start/End: Complemental strand, 4912364 - 4912033
Alignment:
| Q |
3 |
agcttgggagaaaaatccttactagacaagtctagtttggtcatatgagcttataggctcaaaattttgtcttgcagaatagattctaagggtccgtttg |
102 |
Q |
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| T |
4912364 |
agcttgggagaaaaatccttaccagacaagtctagtttggtcatatgagcttataggctcaaaattttgtcttgcagaatagattctaagggtccgtttg |
4912265 |
T |
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| Q |
103 |
ccaagcacaataatttagcttatagcttataagctcatatgaatagaaaggacttatttggtaaccatctatcagctagttgttataagctaacttatca |
202 |
Q |
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| T |
4912264 |
ccaagcacaataatttagcttatagcttataagttcatatgaatagaaaggacttatttggtaaccatctatcagctagttgttataagctaacttatca |
4912165 |
T |
|
| Q |
203 |
gttatctcagtatcaccgacacttctaatcgaaggcatgtcaggtgttagacaataactcgtgtgattacattcggtcgtcannnnnnnnaaattacaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
4912164 |
gttatctcagtatcaccgacacttctaatcgaaggcatgtcaggtgttagacactaattcgtgtgattacattcggtcgtcatttttttaaaattacaac |
4912065 |
T |
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| Q |
303 |
cggtgtctatttgttaatgtcagtgtaggtcc |
334 |
Q |
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| T |
4912064 |
cggtgtctatttgttaatgtcagtgtaggtcc |
4912033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 6909524 - 6909585
Alignment:
| Q |
109 |
acaataatttagcttatagcttataagctcatatgaatagaaaggacttatttggtaaccat |
170 |
Q |
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| T |
6909524 |
acaataaactagcttatagcttataagttcataagactaaaaaagacttgtttggtaaccat |
6909585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 14354692 - 14354616
Alignment:
| Q |
91 |
agggtccgtttgccaagcacaataatttagcttatagcttataagctcatatgaatagaaaggacttatttggtaac |
167 |
Q |
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| T |
14354692 |
agggtctgtttggcaagcacaataagttaccttatagtttataagctcatatgactaaaaaagacccatttggtaac |
14354616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 8173100 - 8173024
Alignment:
| Q |
91 |
agggtccgtttgccaagcacaataatttagcttatagcttataagctcatatgaatagaaaggacttatttggtaac |
167 |
Q |
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| T |
8173100 |
agggtctgtttggcaagcacactaagctaccttatagtttataagctcatatgactaaaaaagaccgatttggtaac |
8173024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8752462 - 8752426
Alignment:
| Q |
32 |
gtctagtttggtcatatgagcttataggctcaaaatt |
68 |
Q |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
8752462 |
gtctattttggtcatatgagcttataggctaaaaatt |
8752426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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