View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_27 (Length: 342)
Name: NF12029_low_27
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 8033411 - 8033685
Alignment:
| Q |
18 |
atcatgtggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggcatctttaattattgtttgttttctctatcaactt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8033411 |
atcatgtggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctctatcaactt |
8033510 |
T |
|
| Q |
118 |
tataatataatttatatcgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggca |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033511 |
tataatataatttatattgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggca |
8033610 |
T |
|
| Q |
218 |
cccattggagcattgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgtt |
292 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033611 |
cccattggagcattgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgtt |
8033685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 7970360 - 7970031
Alignment:
| Q |
18 |
atcatgtggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggcatctttaattattgtttgttttctctatcaactt |
117 |
Q |
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||||||||||| | || ||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||| | |||| | | | | | |
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| T |
7970360 |
atcatgtggcttaaactctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtattttttttttctttaagt |
7970261 |
T |
|
| Q |
118 |
tataatataatttat-atcgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggc |
216 |
Q |
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| | ||||||||| | |||||| ||||||||||||| | |||||| || | ||||||||| |||||||| |||| |||| ||||||||||| || |
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| T |
7970260 |
tcttgaataatttattaatgttataagcacatgtttaatat--ttgctccatata-ttacagatatgtattgttcttggggtatgcataatgattttagc |
7970164 |
T |
|
| Q |
217 |
acccattggagcattgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaacttt--------------gttgcaacttccc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7970163 |
acccattggagcattgaggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttccc |
7970064 |
T |
|
| Q |
303 |
ttgacaatgatgatatctattttctctctgctt |
335 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
7970063 |
ttgacaatgatgatatctattttctctatgctt |
7970031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 36 - 292
Target Start/End: Original strand, 8043366 - 8043621
Alignment:
| Q |
36 |
tacaaaccaaagagattcagcttctcttggtggactaattgggtaggcatctttaattattgt-ttgttttctctatcaactttataatataatttat-- |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||| | || || | | ||||||||| |
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| T |
8043366 |
tacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttttcttctttaagttcttga-ataatttatta |
8043464 |
T |
|
| Q |
133 |
atcgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattg |
232 |
Q |
| |
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|| ||||| ||||||||||||| | |||||| || | |||||||||| || ||||| |||| ||||||||||| || | |||||||||||||||||| |
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| T |
8043465 |
atgtttataagcacatgtttaatat--ttgctccatat-gttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattg |
8043561 |
T |
|
| Q |
233 |
aggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgtt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8043562 |
aggagtattatacttgaagccaagacctaccagttttactcttgatcacctaactttgtt |
8043621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 8033701 - 8033742
Alignment:
| Q |
294 |
caacttcccttgacaatgatgatatctattttctctctgctt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
8033701 |
caacttcccttgacaatgatgatatctactttctctatgctt |
8033742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 8043637 - 8043678
Alignment:
| Q |
294 |
caacttcccttgacaatgatgatatctattttctctctgctt |
335 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
8043637 |
caacttccctggacaatgatgaaatctattttctctatgctt |
8043678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 41380791 - 41380543
Alignment:
| Q |
18 |
atcatgtggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggcatctttaattattgtttgttttctctatcaactt |
117 |
Q |
| |
|
||||||||||| | || ||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| | ||||||||| | || |
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| T |
41380791 |
atcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta---agtt |
41380695 |
T |
|
| Q |
118 |
tataatataatttatatcgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggca |
217 |
Q |
| |
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| | ||||| | ||| ||| ||||||||||||| | |||||| || | ||||||||| |||||||| |||| |||||||||||||| | ||| |
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| T |
41380694 |
tttttaataatgt-tataattaa--gcacatgtttaatat--ttgctccatata-ttacagatatgtattgttcttggggtatgtataatgattctagca |
41380601 |
T |
|
| Q |
218 |
cccattggagcattgaggagtattatacttgaagccaagacctaccagttttactctt |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
41380600 |
cccattggagcattgaggagtattatccttgaagccaagtcctaccagttttactctt |
41380543 |
T |
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