View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12029_low_28 (Length: 330)
Name: NF12029_low_28
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 2461233 - 2461533
Alignment:
| Q |
19 |
aaaggtcgccatggagattctgtccatgttattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461233 |
aaaggtcgccatggagattctgtccatgttattgtggcgtttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaa |
2461332 |
T |
|
| Q |
119 |
tggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461333 |
tggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcact |
2461432 |
T |
|
| Q |
219 |
aggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461433 |
aggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcttcatgctcagttggaatttttgttgatcgtgggctcggtggttca |
2461532 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
2461533 |
t |
2461533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 2450217 - 2450517
Alignment:
| Q |
19 |
aaaggtcgccatggagattctgtccatgttattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaa |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |
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| T |
2450217 |
aaaggtcgccatggagattctctccatgttattgtggcgttcgaggcttaccaaaaactaagccaagtgtttgtccggccaatgatagcaatttcatcga |
2450316 |
T |
|
| Q |
119 |
tggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcact |
218 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2450317 |
tggcgaacattcatgaagacatctgtacaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagagtagacggttcact |
2450416 |
T |
|
| Q |
219 |
aggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggttca |
318 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2450417 |
agacattataagaaacgattttcgtttggttaacaaaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtgggcttggtggttca |
2450516 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
2450517 |
t |
2450517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 2445456 - 2445752
Alignment:
| Q |
19 |
aaaggtcgccatggagattctgtccatgttattgtggcatttgaggcttaccaaaaactaagtcaagtgtgtgtccggccaatgatagcaatttcatcaa |
118 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||| || |||| |
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|
| T |
2445456 |
aaaggtcaccgtgcagattctgaccatgttattgtggcatttgaggcttaccagaaactaagtcaagtttgtgttcgtccaatggtagcaatctcctcaa |
2445555 |
T |
|
| Q |
119 |
tggcgaacattcatgaagacatttgtgcaactgctgatagaaagagagccgcagtcatcattcttccatttcataagcaacaaagattagacggttcact |
218 |
Q |
| |
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|||| |||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||| |
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|
| T |
2445556 |
tggctaacattcacgaagacatatgtgctaccgctgaaagaaagagagccgcagtcatcattctcccattccatatgcaacaaagattagatggttcact |
2445655 |
T |
|
| Q |
219 |
aggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgggctcggtggt |
315 |
Q |
| |
|
|| | ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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|
| T |
2445656 |
agacgttacaagaaatgattttcgatttgttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgcggacttggtggt |
2445752 |
T |
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