View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12029_low_29 (Length: 328)
Name: NF12029_low_29
Description: NF12029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12029_low_29 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 4084848 - 4084532
Alignment:
| Q |
12 |
atgaaagcctttgtgttgnnnnnnngacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattc |
111 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084848 |
atgaaagcctttgtgttgaaaaaaagacgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagccaaattc |
4084749 |
T |
|
| Q |
112 |
cagaatcttatctcgatggtgcaattcgtaaggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatt |
211 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084748 |
cagagtcttatctcgatggtgcaattcgtagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatt |
4084649 |
T |
|
| Q |
212 |
tatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagt |
311 |
Q |
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| T |
4084648 |
tatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagt |
4084549 |
T |
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| Q |
312 |
attgatgcaccatttgt |
328 |
Q |
| |
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||||||||||||||||| |
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| T |
4084548 |
attgatgcaccatttgt |
4084532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 42 - 328
Target Start/End: Original strand, 8158656 - 8158942
Alignment:
| Q |
42 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
141 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| | |
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| T |
8158656 |
gaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatctggatgatgcaattcgga |
8158755 |
T |
|
| Q |
142 |
aggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttgccgag |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
8158756 |
gggcaactatagcaaggaaatttgtaccaattatcataagtgatgagagatatgaggggatagaagtatttatggagggtgtaattaggtatttgccgag |
8158855 |
T |
|
| Q |
242 |
tccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttgt |
328 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
8158856 |
tccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgt |
8158942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 18702313 - 18702022
Alignment:
| Q |
37 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
136 |
Q |
| |
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|||| ||||||||||||||||| |||| ||||||||||||| ||| | ||||| |||||||||||||| |||||||||| ||| |||||||| |||||| |
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| T |
18702313 |
gacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagcaaaattccagagtctgttctcgatgatgcaat |
18702214 |
T |
|
| Q |
137 |
tcgtaaggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttg |
236 |
Q |
| |
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||||| |||||||||| ||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
18702213 |
tcgtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagctatgagacgttaaaactattaatggagggtgtaattaggtatttg |
18702114 |
T |
|
| Q |
237 |
ccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttgt |
328 |
Q |
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|| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18702113 |
ccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagtattgatgcaccatttgt |
18702022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 44302066 - 44301762
Alignment:
| Q |
37 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
136 |
Q |
| |
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|||| |||||||||||||||||||| | ||||||||||||| ||| ||||||| |||||||||| |||||||||| ||| ||||||||||||| |||||| |
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| T |
44302066 |
gacgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaat |
44301967 |
T |
|
| Q |
137 |
tcgtaaggcaactatagcaaggaaatttgtaccaatt---------atcatcagtgatgagagatatgaggggttaa----aactatttatggagggtgt |
223 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
44301966 |
tcgtggggcaaccatagcaaggaaatttgtaccaatttttatgggtattatcagtggtgagagatatgaggggttaattagaactacttatggaggatgt |
44301867 |
T |
|
| Q |
224 |
aattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcacca |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
44301866 |
aattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgcgcca |
44301767 |
T |
|
| Q |
324 |
tttgt |
328 |
Q |
| |
|
||||| |
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|
| T |
44301766 |
tttgt |
44301762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 42 - 328
Target Start/End: Complemental strand, 43896709 - 43896414
Alignment:
| Q |
42 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
141 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||| ||| ||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
43896709 |
gaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgta |
43896610 |
T |
|
| Q |
142 |
aggcaactatagcaaggaaatttgtaccaattatcat---------cagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggta |
232 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||| | ||||||||||| |||| |||||| ||||| |||||||||||||||||||||| |
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| T |
43896609 |
gggcaactatatcaatgaaatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaattaggta |
43896510 |
T |
|
| Q |
233 |
tttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttgt |
328 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
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| T |
43896509 |
tttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctggaagcattgatgcgccatttgt |
43896414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 44307168 - 44306868
Alignment:
| Q |
37 |
gacgagaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaat |
136 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||||||||||||| |||| ||| |||||||| |||||| |
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|
| T |
44307168 |
gacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaat |
44307069 |
T |
|
| Q |
137 |
tcgtaaggcaactatagcaaggaaatttgtaccaattatcat---------cagtgatgagagatatgaggggttaaaactatttatggagggtgtaatt |
227 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||| |||| |||||| |||||||| ||||||||| ||||| ||| ||||||||||||| |
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|
| T |
44307068 |
tcgtagggcaaccatagcacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaatt |
44306969 |
T |
|
| Q |
228 |
aggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttg |
327 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||| |
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|
| T |
44306968 |
aggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttg |
44306869 |
T |
|
| Q |
328 |
t |
328 |
Q |
| |
|
| |
|
|
| T |
44306868 |
t |
44306868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 44317345 - 44317160
Alignment:
| Q |
42 |
gaactcattgaaattgtatcaggggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagaatcttatctcgatggtgcaattcgta |
141 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||| |||||||||| ||| ||| |||||||| ||||||||||| |
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|
| T |
44317345 |
gaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgta |
44317246 |
T |
|
| Q |
142 |
aggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaatt |
227 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44317245 |
gggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
44317160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 44312753 - 44312647
Alignment:
| Q |
222 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcac |
321 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||| | |
|
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| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
322 |
catttgt |
328 |
Q |
| |
|
||||||| |
|
|
| T |
44312653 |
catttgt |
44312647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 35856591 - 35856678
Alignment:
| Q |
231 |
tatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatg |
318 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||| ||||||| ||||||||| |||||||| ||||||| |||||||||||||| |
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|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatg |
35856678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 35856474 - 35856531
Alignment:
| Q |
121 |
atctcgatggtgcaattcgtaaggcaactatagcaaggaaatttgtaccaattatcat |
178 |
Q |
| |
|
|||| |||||| ||||||||| ||| || |||||||||||||||||||||||| |||| |
|
|
| T |
35856474 |
atcttgatggtacaattcgtagggctacaatagcaaggaaatttgtaccaattttcat |
35856531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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